miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 133 bits (67), Expect = 5e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 9 tggggctgaggtagtagattgaatagttgtggggttgtgtgacctctatgtgagataact 68
|||||||||||||||||||||||||||||||||||||| | |||||| | ||||||||||
Sbjct: 1 tggggctgaggtagtagattgaatagttgtggggttgtctaacctctttttgagataact 60
Query: 69 atacaatctactgtctttcccaa 91
|||||||||||||||||||||||
Sbjct: 61 atacaatctactgtctttcccaa 83
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 95.6 bits (48), Expect = 1e-19
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 9 tggggctgaggtagtagattgaatagttgtggggttgtgtgacctctat-gtgagataac 67
|||||||||||||||||||||||||||||||||||| | ||||||| | | || ||||
Sbjct: 1 tggggctgaggtagtagattgaatagttgtggggttttccgacctctttcttcagttaac 60
Query: 68 tatacaatctactgtctttcccaa 91
||||||||||||||||||||||||
Sbjct: 61 tatacaatctactgtctttcccaa 84
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 87.7 bits (44), Expect = 2e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 9 tggggctgaggtagtagattgaatagttgtggggttgtgtgacctctatgtgagataact 68
|||||||||||||||||||||||||||||||| | || | |||| | ||||||||||
Sbjct: 1 tggggctgaggtagtagattgaatagttgtggagccctgcgctctctctctgagataact 60
Query: 69 atacaatctactgtctttcc 88
||||||||||||||||||||
Sbjct: 61 atacaatctactgtctttcc 80
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 81.8 bits (41), Expect = 2e-15
Identities = 69/77 (89%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 12 ggctgaggtagtagattgaatagttgtggggttgtgtgacctctatgtgagataactata 71
||||||||||||||||||||||||||||||||| | | |||| | |||||||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtggggtt-taagtcctccctctgagataactata 62
Query: 72 caatctactgtctttcc 88
|| ||||||||||||||
Sbjct: 63 cagtctactgtctttcc 79
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 75.8 bits (38), Expect = 9e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 15 tgaggtagtagattgaatagttgtggggttgtgtgacctctatgtgagataactatacaa 74
|||||||||||||||||||||||||||||| | |||| | ||||||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggtt-tacatcctccttttgagataactatacaa 65
Query: 75 tctactgtctttcc 88
||||||||||||||
Sbjct: 66 tctactgtctttcc 79
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 75.8 bits (38), Expect = 9e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 15 tgaggtagtagattgaatagttgtggggttgtgtgacctctatgtgagataactatacaa 74
|||||||||||||||||||||||||||||| || |||| | |||||||||||||||
Sbjct: 7 tgaggtagtagattgaatagttgtggggtt-catgtcctccttttgagataactatacag 65
Query: 75 tctactgtctttcc 88
||||||||||||||
Sbjct: 66 tctactgtctttcc 79
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 69.9 bits (35), Expect = 6e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 13 gctgaggtagtagattgaatagttgtggggttgtgtgacctctatgtgagataactatac 72
|||||||||||||||||||||||||||| || | ||||| | ||||||||||||||
Sbjct: 5 gctgaggtagtagattgaatagttgtggagta-taaaacctccctttgagataactatac 63
Query: 73 aatctactgtctttc 87
|||||||||||||||
Sbjct: 64 aatctactgtctttc 78
>RF00027;let-7;AAPN01367903.1/288-368 9258:Ornithorhynchus
anatinus (platypus)
Length = 81
Score = 67.9 bits (34), Expect = 2e-11
Identities = 67/77 (87%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 12 ggctgaggtagtagattgaatagttgtggggttgtgtgacctctatgtgagataactata 71
|||||||||||||||||||||||||||||||| | |||| |||| | ||||||||
Sbjct: 4 ggctgaggtagtagattgaatagttgtggggt--cacggcctccctgtgtgctaactata 61
Query: 72 caatctactgtctttcc 88
|||||||||||||||||
Sbjct: 62 caatctactgtctttcc 78
>RF00027;let-7;AAVX01156403.1/1100-1020 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 67.9 bits (34), Expect = 2e-11
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 11 gggctgaggtagtagattgaatagttgtggggttgtgtgacctctatgtgagataactat 70
||||||||||||||||||| ||||||||| |||||| ||||| | ||||||||||||
Sbjct: 3 gggctgaggtagtagattgtatagttgtgaggttgt-acacctc-ctctgagataactat 60
Query: 71 acaatctactgtctttcc 88
|||||||||||||||||
Sbjct: 61 gcaatctactgtctttcc 78
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 57 tgtgagataactatacaatctactgtctttccc 89
||||||||||||||||| |||||||||||||||
Sbjct: 49 tgtgagataactatacagtctactgtctttccc 81
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 60 gagataactatacaatctactgtctttcc 88
|||||||||||||||||||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttcc 80
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 60 gagataactatacaatctactgtctttcc 88
|||||||||||||||||||||||||||||
Sbjct: 50 gagataactatacaatctactgtctttcc 78
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 60 gagataactatacaatctactgtctttc 87
||||||||||||||||||||||||||||
Sbjct: 50 gagataactatacaatctactgtctttc 77
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 61 agataactatacaatctactgtctttcc 88
||||||||||||||||||||||||||||
Sbjct: 51 agataactatacaatctactgtctttcc 78
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 62 gataactatacaatctactgtctttcc 88
|||||||||||||||||||||||||||
Sbjct: 50 gataactatacaatctactgtctttcc 76
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 60 gagataactatacaatctactgtctttccca 90
|||||||||||||| ||||||||||||||||
Sbjct: 50 gagataactatacagtctactgtctttccca 80
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 taactatacaatctactgtctttcc 88
|||||||||||||||||||||||||
Sbjct: 51 taactatacaatctactgtctttcc 75
>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
nigroviridis
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 gagataactatacaatctactgtctttc 87
|||||||||||||| |||||||||||||
Sbjct: 50 gagataactatacagtctactgtctttc 77
