miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;CAAE01014729.1/11382-11302 99883:Tetraodon
nigroviridis
Length = 81
Score = 143 bits (72), Expect = 4e-34
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 tgggatgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactata 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2 tgggatgaggtagtagtttgtatagttttgggatcacaccagatctgggagataactata 61
Query: 61 cagtctactgtctttc 76
||||||||||||||||
Sbjct: 62 cagtctactgtctttc 77
>RF00027;let-7;BAAF04080487.1/5225-5305 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 143 bits (72), Expect = 4e-34
Identities = 75/76 (98%)
Strand = Plus / Plus
Query: 1 tgggatgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgggatgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactata 61
Query: 61 cagtctactgtctttc 76
||| ||||||||||||
Sbjct: 62 cagcctactgtctttc 77
>RF00027;let-7;CR735130.17/58450-58371 7955:Danio rerio
(zebrafish)
Length = 80
Score = 111 bits (56), Expect = 1e-24
Identities = 69/72 (95%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 5 atgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactatacagt 64
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 6 atgaggtagtagtttgtatagtttg-ggatcacaccagatctgggagataactatacagc 64
Query: 65 ctactgtctttc 76
||||||||||||
Sbjct: 65 ctactgtctttc 76
>RF00027;let-7;ABRQ01114152.1/454-374 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 97.6 bits (49), Expect = 2e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 3 ggatgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactataca 62
|||||||||||||| ||||||||||||||| | | ||| |||| |||||||||||||||
Sbjct: 4 ggatgaggtagtagattgtatagttttagggttataccccatcttggagataactataca 63
Query: 63 gtctactgtctttccca 79
|||||||||||||||||
Sbjct: 64 gtctactgtctttccca 80
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 97.6 bits (49), Expect = 2e-20
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 1 tgggatgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactata 60
|||||||||||||||| ||||||||||||||| ||| ||| | ||| |||||||||||||
Sbjct: 2 tgggatgaggtagtagattgtatagttttagggtcatacccggtcttggagataactata 61
Query: 61 cagtctactgtctttcc 77
|| ||||||||||||||
Sbjct: 62 caatctactgtctttcc 78
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 95.6 bits (48), Expect = 8e-20
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 1 tgggatgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactata 60
|||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttttagggtcacacccacactgggagataactata 61
Query: 61 cagtctactgtctttc 76
|| |||||||||||||
Sbjct: 62 caatctactgtctttc 77
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 77.8 bits (39), Expect = 2e-14
Identities = 71/79 (89%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 1 tgggatgaggtagtagtttgtatagtttt-aggatcacacc-agatctgggagataacta 58
|||||||||||||||| |||||||||||| ||| ||||||| | ||||||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagtttttagggtcacacccaccactgggagataacta 61
Query: 59 tacagtctactgtctttcc 77
|||| ||||||||||||||
Sbjct: 62 tacaatctactgtctttcc 80
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 69.9 bits (35), Expect = 4e-12
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 1 tgggatgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactata 60
|||||||||||||||| ||||||||||||| | ||| ||| | |||||||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttttacggtcatacccgcactgggagataactatt 61
Query: 61 cagtctactgtctttccca 79
| |||||||||||||||
Sbjct: 62 aaacctactgtctttccca 80
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 65.9 bits (33), Expect = 7e-11
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 1 tgggatgaggtagtagtttgtatagttttaggatcacaccagatctgggagataactata 60
|||||||||||||||| ||||||||||||||| | ||||| | | |||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttttagggttacacccttccggtcagataactata 61
Query: 61 cagtctactgtctttcc 77
|| ||||||||||||||
Sbjct: 62 caatctactgtctttcc 78
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 44 tctgggagataactatacagtctactgtctttccc 78
|||| ||||||||||||||||||||||||||||||
Sbjct: 47 tctgtgagataactatacagtctactgtctttccc 81
>RF00027;let-7;CAAB01006742.1/7725-7806 31033:Takifugu rubripes
Length = 82
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 49 gagataactatacagtctactgtctttcc 77
|||||||||||||||||||||||||||||
Sbjct: 51 gagataactatacagtctactgtctttcc 79
>RF00027;let-7;BAAF04096587.1/14346-14265 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 49 gagataactatacagtctactgtctttcc 77
|||||||||||||||||||||||||||||
Sbjct: 51 gagataactatacagtctactgtctttcc 79
>RF00027;let-7;AANH01002639.1/21280-21198 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 49 gagataactatacagtctactgtctttccca 79
|||||||||||||| ||||||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttccca 82
>RF00027;let-7;CR936540.12/43970-44052 7955:Danio rerio
(zebrafish)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 49 gagataactatacagtctactgtctttcc 77
|||||||||||||| ||||||||||||||
Sbjct: 52 gagataactatacaatctactgtctttcc 80
>RF00027;let-7;ABPM01013261.1/416-335 106582:Maylandia zebra
(zebra mbuna)
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 49 gagataactatacagtctactgtctttcc 77
|||||||||||||| ||||||||||||||
Sbjct: 51 gagataactatacaatctactgtctttcc 79
>RF00027;let-7;CR847944.11/44347-44429 7955:Danio rerio
(zebrafish)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 49 gagataactatacagtctactgtctttc 76
|||||||||||||| |||||||||||||
Sbjct: 51 gagataactatacaatctactgtctttc 78
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tgggatgaggtagtagtttgtatagttttagg 32
|||| ||||||||||| |||||||||||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttttagg 33
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 tgggatgaggtagtagtttgtatagttttagg 32
|||| ||||||||||| |||||||||||||||
Sbjct: 2 tggggtgaggtagtaggttgtatagttttagg 33
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 51 gataactatacagtctactgtctttcc 77
|||||||||||| ||||||||||||||
Sbjct: 50 gataactatacaatctactgtctttcc 76
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 gggatgaggtagtagtttgtatagttt 28
||||||||||||||| |||||||||||
Sbjct: 3 gggatgaggtagtaggttgtatagttt 29
>RF00027;let-7;BAAF04002563.1/3069-3152 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 53 taactatacagtctactgtctttccca 79
|||||||||| ||||||||||||||||
Sbjct: 57 taactatacaatctactgtctttccca 83
