miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34532_fru-let-7h:mirbase
Length = 84
Score = 121 bits (61), Expect = 1e-28
Identities = 81/87 (93%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 13 tgtggtgaggtagtaagttgtgttgttgttggggatcaagattgtgcaccctgtcaagga 72
||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||
Sbjct: 1 tgtggtgaggtagtaagttgtgttgttgtagggga---agattgtgcaccctgttcagga 57
Query: 73 gataactatacaacttactgccttcct 99
|||||||||||||||||||||||||||
Sbjct: 58 gataactatacaacttactgccttcct 84
>34181_dre-let-7h:mirbase
Length = 114
Score = 87.7 bits (44), Expect = 1e-18
Identities = 83/96 (86%)
Strand = Plus / Plus
Query: 3 ttggctttgctgtggtgaggtagtaagttgtgttgttgttggggatcaagattgtgcacc 62
|||||| || |||||||||||||||||||||||||||||||||||||| || || |
Sbjct: 4 ttggctgtgttgtggtgaggtagtaagttgtgttgttgttggggatcagtatagtatggc 63
Query: 63 ctgtcaaggagataactatacaacttactgccttcc 98
| | |||||||||||||||||| ||||||||||||
Sbjct: 64 ccttgaaggagataactatacaatttactgccttcc 99
>25753_xtr-mir-98:mirbase
Length = 108
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 69 aggagataactatacaacttactgccttcc 98
|||||||||||||||| |||||||||||||
Sbjct: 64 aggagataactatacagcttactgccttcc 93
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 18 tgaggtagtaagttgtgttgttgttgggg 46
|||||||||||||||| ||||||| ||||
Sbjct: 17 tgaggtagtaagttgtattgttgtggggg 45
>25871_gga-let-7b:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 69 aggagataactatacaacttactgccttcc 98
|||||||||||||||||| |||||||||||
Sbjct: 53 aggagataactatacaacctactgccttcc 82
>26379_tgu-let-7b:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 69 aggagataactatacaacttactgccttcc 98
|||||||||||||||||| |||||||||||
Sbjct: 58 aggagataactatacaacctactgccttcc 87
>31824_mmu-mir-98:mirbase
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 tgctgtggtgaggtagtaagttgtgttgttgt 41
||||| |||||||||||||||||| |||||||
Sbjct: 8 tgctggggtgaggtagtaagttgtattgttgt 39
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 68 agataactatacaacttact 87
>32705_rno-mir-98:mirbase
Length = 108
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 tgctgtggtgaggtagtaagttgtgttgttgt 41
||||| |||||||||||||||||| |||||||
Sbjct: 8 tgctggggtgaggtagtaagttgtattgttgt 39
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 68 agataactatacaacttact 87
>33184_bta-mir-98:mirbase
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 10 tgctgtggtgaggtagtaagttgtgttgttgt 41
||||| |||||||||||||||||| |||||||
Sbjct: 14 tgctggggtgaggtagtaagttgtattgttgt 45
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 74 agataactatacaacttact 93
>33789_bta-mir-3596:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 72 agataactatacaacttactgccttcct 99
||||||||||||||| ||||||||||||
Sbjct: 32 agataactatacaacctactgccttcct 5
>27321_mdo-let-7b:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactgccttcc 98
||||||||||||||| |||||||||||
Sbjct: 58 agataactatacaacctactgccttcc 84
>27632_mml-let-7b:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactgccttcc 98
||||||||||||||| |||||||||||
Sbjct: 54 agataactatacaacctactgccttcc 80
>28342_hsa-let-7b:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactgccttcc 98
||||||||||||||| |||||||||||
Sbjct: 54 agataactatacaacctactgccttcc 80
>30129_ptr-let-7b:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactgccttcc 98
||||||||||||||| |||||||||||
Sbjct: 53 agataactatacaacctactgccttcc 79
>30734_ppy-let-7b:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactgccttcc 98
||||||||||||||| |||||||||||
Sbjct: 54 agataactatacaacctactgccttcc 80
>31754_mmu-let-7b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactgccttcc 98
||||||||||||||| |||||||||||
Sbjct: 55 agataactatacaacctactgccttcc 81
>32640_rno-let-7b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactgccttcc 98
||||||||||||||| |||||||||||
Sbjct: 55 agataactatacaacctactgccttcc 81
>33111_bta-let-7b:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactgccttcc 98
||||||||||||||| |||||||||||
Sbjct: 55 agataactatacaacctactgccttcc 81
>26994_eca-mir-98:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ggtgaggtagtaagttgtgttgttgt 41
|||||||||||||||||| |||||||
Sbjct: 20 ggtgaggtagtaagttgtattgttgt 45
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 74 agataactatacaacttact 93
>28411_hsa-mir-98:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ggtgaggtagtaagttgtgttgttgt 41
|||||||||||||||||| |||||||
Sbjct: 20 ggtgaggtagtaagttgtattgttgt 45
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 74 agataactatacaacttact 93
>30195_ptr-mir-98:mirbase
Length = 119
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ggtgaggtagtaagttgtgttgttgt 41
|||||||||||||||||| |||||||
Sbjct: 20 ggtgaggtagtaagttgtattgttgt 45
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 74 agataactatacaacttact 93
>33955_ssc-mir-98:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ggtgaggtagtaagttgtgttgttgt 41
|||||||||||||||||| |||||||
Sbjct: 2 ggtgaggtagtaagttgtattgttgt 27
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 56 agataactatacaacttact 75
>34171_dre-let-7b:mirbase
Length = 94
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 69 aggagataactatacaacttactgccttcc 98
||||| |||||||||||| |||||||||||
Sbjct: 57 aggagttaactatacaacctactgccttcc 86
>34528_fru-let-7b:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 69 aggagataactatacaacttactgccttcc 98
||||| |||||||||||| |||||||||||
Sbjct: 52 aggagctaactatacaacctactgccttcc 81
>34676_tni-let-7b:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 69 aggagataactatacaacttactgccttcc 98
||||| |||||||||||| |||||||||||
Sbjct: 52 aggagctaactatacaacctactgccttcc 81
>27500_age-mir-98:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 gtgaggtagtaagttgtgttgttgt 41
||||||||||||||||| |||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgt 25
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 54 agataactatacaacttact 73
>27701_mml-mir-98:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 gtgaggtagtaagttgtgttgttgt 41
||||||||||||||||| |||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgt 25
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 54 agataactatacaacttact 73
>28291_ggo-mir-98:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 gtgaggtagtaagttgtgttgttgt 41
||||||||||||||||| |||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgt 25
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 54 agataactatacaacttact 73
>30078_ppa-mir-98:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 gtgaggtagtaagttgtgttgttgt 41
||||||||||||||||| |||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgt 25
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 54 agataactatacaacttact 73
>30801_ppy-mir-98:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 gtgaggtagtaagttgtgttgttgt 41
||||||||||||||||| |||||||
Sbjct: 1 gtgaggtagtaagttgtattgttgt 25
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 54 agataactatacaacttact 73
>34167_dre-let-7a-3:mirbase
Length = 107
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactg 92
|||||||||||||||||||||
Sbjct: 62 agataactatacaacttactg 82
>34526_fru-let-7a-2:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactg 92
|||||||||||||||||||||
Sbjct: 48 agataactatacaacttactg 68
>34674_tni-let-7a-2:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactg 92
|||||||||||||||||||||
Sbjct: 56 agataactatacaacttactg 76
>26672_cfa-mir-98:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 tgaggtagtaagttgtgttgttgt 41
|||||||||||||||| |||||||
Sbjct: 1 tgaggtagtaagttgtattgttgt 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 agataactatacaacttact 91
||||||||||||||||||||
Sbjct: 53 agataactatacaacttact 72
>31469_oan-mir-98:mirbase
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 18 tgaggtagtaagttgtgttgttgt 41
|||||||||||||||| |||||||
Sbjct: 31 tgaggtagtaagttgtattgttgt 54
