miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;CAAB01000053.1/115251-115164 31033:Takifugu
rubripes
Length = 88
Score = 123 bits (62), Expect = 5e-28
Identities = 82/88 (93%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 12 ctgtggtgaggtagtaagttgtgttgttgttggggatcaagattgtgcaccctgtcaagg 71
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||
Sbjct: 1 ctgtggtgaggtagtaagttgtgttgttgtagggga---agattgtgcaccctgttcagg 57
Query: 72 agataactatacaacttactgccttcct 99
||||||||||||||||||||||||||||
Sbjct: 58 agataactatacaacttactgccttcct 85
>RF00027;let-7;BAAF04002393.1/17587-17677 8090:Oryzias latipes
(Japanese medaka)
Length = 91
Score = 119 bits (60), Expect = 7e-27
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 16 ggtgaggtagtaagttgtgttgttgttggggatcaagattgtgcaccctgtcaaggagat 75
||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct: 5 ggtgaggtagtaagttgtgttgttgttggggatcaagtatgtgcaccccgctcaggagat 64
Query: 76 aactatacaacttactgccttcct 99
||||||||||||||||||||||||
Sbjct: 65 aactatacaacttactgccttcct 88
>RF00027;let-7;BX664745.13/143600-143510 7955:Danio rerio
(zebrafish)
Length = 91
Score = 83.8 bits (42), Expect = 4e-16
Identities = 75/86 (87%)
Strand = Plus / Plus
Query: 13 tgtggtgaggtagtaagttgtgttgttgttggggatcaagattgtgcaccctgtcaagga 72
|||||||||||||||||||||||||||||||||||||| || || || | |||||
Sbjct: 2 tgtggtgaggtagtaagttgtgttgttgttggggatcagtatagtatggcccttgaagga 61
Query: 73 gataactatacaacttactgccttcc 98
||||||||||||| ||||||||||||
Sbjct: 62 gataactatacaatttactgccttcc 87
>RF00027;let-7;CAAB01003893.1/10262-10170 31033:Takifugu rubripes
Length = 93
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 12 ctgtggtgaggtagtaagttgtgttgttgttgggg 46
|||||||||||||||||||||||||||||| ||||
Sbjct: 1 ctgtggtgaggtagtaagttgtgttgttgtggggg 35
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 76 aactatacaacttactgccttcc 98
|||||||||||||||||||||||
Sbjct: 67 aactatacaacttactgccttcc 89
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 69 aggagataactatacaacttactgccttcct 99
|||||||||||||||||| ||||||||||||
Sbjct: 54 aggagataactatacaacctactgccttcct 84
>RF00027;let-7;AANH01002616.1/64077-64170 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 94
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 12 ctgtggtgaggtagtaagttgtgttgttgt 41
|||||||||||||||| |||||||||||||
Sbjct: 1 ctgtggtgaggtagtatgttgtgttgttgt 30
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 69 aggagataactatacaacttactgccttcc 98
|||||||||||||||||| |||||||||||
Sbjct: 54 aggagataactatacaacctactgccttcc 83
>RF00027;let-7;AAQR01020418.1/249-164 30611:Otolemur garnettii
(small-eared galago)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactgccttcc 98
||||||||||||||| |||||||||||
Sbjct: 56 agataactatacaacctactgccttcc 82
>RF00027;let-7;AANH01001398.1/49056-49141 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 72 agataactatacaacttactgccttcc 98
||||||||||||||| |||||||||||
Sbjct: 56 agataactatacaacatactgccttcc 82
>RF00027;let-7;BAAE01218263.1/598-683 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 68 aaggagataactatacaacttactgccttcc 98
|||||| |||||||||||| |||||||||||
Sbjct: 52 aaggagctaactatacaacctactgccttcc 82
>RF00027;let-7;AAPE01289140.1/8994-8905 59463:Myotis lucifugus
(little brown bat)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ggtgaggtagtaagttgtgttgttgt 41
|||||||||||||||||| |||||||
Sbjct: 5 ggtgaggtagtaagttgtattgttgt 30
>RF00027;let-7;ABRQ01114151.1/10843-10755 9813:Procavia capensis
(cape rock hyrax)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 16 ggtgaggtagtaagttgtgttgttgttggg 45
|||||||||||||||||| |||||| ||||
Sbjct: 5 ggtgaggtagtaagttgtattgttgctggg 34
>RF00027;let-7;AAWZ01028874.1/2915-3002 28377:Anolis carolinensis
(green anole)
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ggtgaggtagtaagttgtgttgttgt 41
|||||||||||||||||| |||||||
Sbjct: 5 ggtgaggtagtaagttgtattgttgt 30
