miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAF04035801.1/1686-1772 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 159 bits (80), Expect = 7e-39
Identities = 83/84 (98%)
Strand = Plus / Plus
Query: 1 ctggctgaggtagtagtttgtgctgttggttgggttgtgacactgcccgctatggagatg 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 2 ctggctgaggtagtagtttgtgctgttggttgggttgagacactgcccgctatggagatg 61
Query: 61 actgcgcaagctactgccttgcta 84
||||||||||||||||||||||||
Sbjct: 62 actgcgcaagctactgccttgcta 85
>RF00027;let-7;CAAB01000076.1/26328-26242 31033:Takifugu rubripes
Length = 87
Score = 85.7 bits (43), Expect = 8e-17
Identities = 73/83 (87%)
Strand = Plus / Plus
Query: 1 ctggctgaggtagtagtttgtgctgttggttgggttgtgacactgcccgctatggagatg 60
||||||||||||||| |||||||||||||| ||||||| | ||||| | ||||||||
Sbjct: 2 ctggctgaggtagtattttgtgctgttggtcgggttgtcctattgccccttgtggagatg 61
Query: 61 actgcgcaagctactgccttgct 83
||||||||| |||||||||||||
Sbjct: 62 actgcgcaatctactgccttgct 84
>RF00027;let-7;AANH01007768.1/28424-28513 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 90
Score = 79.8 bits (40), Expect = 5e-15
Identities = 68/76 (89%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 6 tgaggtagtagtttgtgctgttggttgggttgtgacactg-cccgctatggagatgactg 64
||||||||||||||||||||||||| ||||||| | | || |||| | ||||||||||||
Sbjct: 7 tgaggtagtagtttgtgctgttggtcgggttgtcatattgccccgttttggagatgactg 66
Query: 65 cgcaagctactgcctt 80
||||| ||||||||||
Sbjct: 67 cgcaatctactgcctt 82
>RF00027;let-7;BAAF04117990.1/808-722 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 79.8 bits (40), Expect = 5e-15
Identities = 70/80 (87%)
Strand = Plus / Plus
Query: 3 ggctgaggtagtagtttgtgctgttggttgggttgtgacactgcccgctatggagatgac 62
|||||||||||||||||||||||||||| |||| || |||||| | |||||| ||||
Sbjct: 4 ggctgaggtagtagtttgtgctgttggtcgggtcgtcgtgctgcccccgatggaggtgac 63
Query: 63 tgcgcaagctactgccttgc 82
||||||| ||||||||||||
Sbjct: 64 tgcgcaatctactgccttgc 83
>RF00027;let-7;BAAE01140557.1/855-941 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 75.8 bits (38), Expect = 8e-14
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 1 ctggctgaggtagtagtttgtgctgttggttgggttgtgacactgcccgctatggagatg 60
|||||||||||||||||||||||||||||| |||| || |||||| |||||| ||
Sbjct: 2 ctggctgaggtagtagtttgtgctgttggtcgggtcgtcgtgctgcccctgatggaggtg 61
Query: 61 actgcgcaagctactgccttgc 82
||||||||| ||||||||||||
Sbjct: 62 actgcgcaatctactgccttgc 83
