miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;BAAE01044355.1/4683-4770 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 147 bits (74), Expect = 2e-35
Identities = 80/82 (97%)
Strand = Plus / Plus
Query: 1 gtctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaa 60
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4 gtctgaggtagttgtttgtacagtttgagggtctgtgattctgcccgatacaggagctaa 63
Query: 61 ctgtacaagtgactgccttgcc 82
||||||||||||||||||||||
Sbjct: 64 ctgtacaagtgactgccttgcc 85
>RF00027;let-7;AANH01007698.1/145537-145624 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 88
Score = 139 bits (70), Expect = 6e-33
Identities = 79/82 (96%)
Strand = Plus / Plus
Query: 1 gtctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaa 60
||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 4 gtctgaggtagttgtttgtacagtttgagggtctgttattctgccccaaacaggagctaa 63
Query: 61 ctgtacaagtgactgccttgcc 82
||||||||||||||||||||||
Sbjct: 64 ctgtacaagtgactgccttgcc 85
>RF00027;let-7;AADN02056441.1/23079-23166 9031:Gallus gallus
(chicken)
Length = 88
Score = 63.9 bits (32), Expect = 3e-10
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 3 ctgaggtagttttttgtacagtttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| |||||||||||||||||||| |||| | ||| |||||||| |||||
Sbjct: 6 ctgaggtagtagtttgtacagtttgagggtctatgataccacccggtacaggagataact 65
Query: 63 gtacaagtgactgccttgcc 82
||||| | |||||||||||
Sbjct: 66 gtacaggccactgccttgcc 85
>RF00027;let-7;AL935208.8/111380-111468 7955:Danio rerio
(zebrafish)
Length = 89
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttttttgtacag-tttgagggtctgtgattctgccccatacaggagctaact 62
|||||||||| ||||||||| ||| ||||||||| ||||||||| | |||||||||||
Sbjct: 7 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 66
Query: 63 gtaca 67
|||||
Sbjct: 67 gtaca 71
>RF00027;let-7;AAVX01039717.1/937-849 7868:Callorhinchus milii
(ghost shark)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 5 gaggtagttttttgtacagtttgagggtctgtga 38
||||||||| |||||||||||||||||| |||||
Sbjct: 8 gaggtagttgtttgtacagtttgagggtttgtga 41
