miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 147 bits (74), Expect = 3e-35
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 8 ccttagtgtacatacttctttatgtacccatatgaacatatgataactatggaatgtaaa 67
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ccttagtgtacatacttctttatgtacccatatggacatatgataactatggaatgtaaa 60
Query: 68 gaagtatgtattcttggt 85
||||||||||||||||||
Sbjct: 61 gaagtatgtattcttggt 78
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 109 bits (55), Expect = 6e-24
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 15 gtacatacttctttatgtacccatatgaacatatgataactatggaatgtaaagaagtat 74
||||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||
Sbjct: 8 gtacatacttctttatgtacccatatgaagatatgaaagctatggaatgtaaagaagtat 67
Query: 75 gtattct 81
|||||||
Sbjct: 68 gtattct 74
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 89.7 bits (45), Expect = 6e-18
Identities = 61/65 (93%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 15 gtacatacttctttatgtacccatatgaacatatgataactatggaatgtaaagaagtat 74
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 8 gtacatacttctttatgtacccatatgaacatacaat-gctatggaatgtaaagaagtat 66
Query: 75 gtatt 79
|||||
Sbjct: 67 gtatt 71
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 15 gtacatacttctttatgtacccatatgaacatatgataactatggaatgtaaagaagtat 74
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 8 gtacatacttctttatgtacccatatgaacata--aatgctatggaatgtaaagaagtat 65
Query: 75 gtattcttggt 85
||||| |||||
Sbjct: 66 gtatttttggt 76
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 85.7 bits (43), Expect = 9e-17
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 15 gtacatacttctttatgtacccatatgaacatatgataactatggaatgtaaagaagtat 74
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 8 gtacatacttctttatgtacccatatgaacata-gaatgctatggaatgtaaagaagtat 66
Query: 75 gta 77
|||
Sbjct: 67 gta 69
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 81.8 bits (41), Expect = 1e-15
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 15 gtacatacttctttatgtacccatatgaacatatgataactatggaatgtaaagaagtat 74
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 8 gtacatacttctttatgtacccatatgaacata-caaggctatggaatgtaaagaagtat 66
Query: 75 gtatt 79
|||||
Sbjct: 67 gtatt 71
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 75.8 bits (38), Expect = 9e-14
Identities = 62/69 (89%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 17 acatacttctttatgtacccatatgaacatatgataactatggaatgtaaagaagtatgt 76
|||||||||||||| ||||||||||||| || | | |||||||||||||||||||||||
Sbjct: 10 acatacttctttatatacccatatgaactta--acagctatggaatgtaaagaagtatgt 67
Query: 77 attcttggt 85
||| |||||
Sbjct: 68 atttttggt 76
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 69.9 bits (35), Expect = 5e-12
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 17 acatacttctttatgtacccatatgaacatatgataactatggaatgtaaagaagtatgt 76
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaagatacaat-gttatggaatgtaaagaagtatgt 68
Query: 77 att 79
|||
Sbjct: 69 att 71
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 60.0 bits (30), Expect = 5e-09
Identities = 55/62 (88%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 17 acatacttctttatgtacccatatgaacatatgataactatggaatgtaaagaagtatgt 76
|||||||||||||| | |||||||||||| | |||||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccatatgaacacgagc-aactatggaatgtaaagaagtatgt 68
Query: 77 at 78
||
Sbjct: 69 at 70
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/64 (89%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 17 acatacttctttatgtacccatatgaacatatgataa-ctatggaatgtaaagaagtatg 75
|||||||||||||| | ||||||||||| | | ||| ||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccatatgaacct--gctaagctatggaatgtaaagaagtatg 67
Query: 76 tatt 79
||||
Sbjct: 68 tatt 71
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 55/63 (87%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 17 acatacttctttatgtacccatatgaacatatgataactatggaatgtaaagaagtatgt 76
|||||||||||||| | ||||||||||| | | | |||||||||||||||||||||||
Sbjct: 10 acatacttctttatatgcccatatgaacctggca-atctatggaatgtaaagaagtatgt 68
Query: 77 att 79
|||
Sbjct: 69 att 71
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 54 ctatggaatgtaaagaagtatgtattcttgg 84
|||||||||||||||||||||||||| ||||
Sbjct: 45 ctatggaatgtaaagaagtatgtatttttgg 75
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 ctatggaatgtaaagaagtatgtatt 79
||||||||||||||||||||||||||
Sbjct: 49 ctatggaatgtaaagaagtatgtatt 74
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 ctatggaatgtaaagaagtatgtat 78
|||||||||||||||||||||||||
Sbjct: 45 ctatggaatgtaaagaagtatgtat 69
>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
(American pika)
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 actatggaatgtaaagaagtatgta 77
|||||||||||||||||||||||||
Sbjct: 45 actatggaatgtaaagaagtatgta 69
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 ctatggaatgtaaagaagtatgtat 78
|||||||||||||||||||||||||
Sbjct: 46 ctatggaatgtaaagaagtatgtat 70
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tatggaatgtaaagaagtatgtat 78
||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgtat 69
>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
spiralis
Length = 75
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tatggaatgtaaagaagtatgta 77
|||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgta 67
>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tatggaatgtaaagaagtatgta 77
|||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgta 85
>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
japonica
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tatggaatgtaaagaagtatgta 77
|||||||||||||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatgta 79
>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
remanei
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tatggaatgtaaagaagtatgta 77
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
briggsae
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tatggaatgtaaagaagtatgta 77
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
pacificus
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tatggaatgtaaagaagtatgta 77
|||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgta 74
>RF00103;mir-1;AAQR01319106.1/4854-4930 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 17 acatacttctttatgtacccatatgaa 43
||||||||| |||||||||||||||||
Sbjct: 10 acatacttcgttatgtacccatatgaa 36
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 ctatggaatgtaaagaagtatg 75
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 ctatggaatgtaaagaagtatg 75
||||||||||||||||||||||
Sbjct: 48 ctatggaatgtaaagaagtatg 69
