miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;CAAB01001327.1/34126-34200 31033:Takifugu rubripes
Length = 75
Score = 125 bits (63), Expect = 9e-29
Identities = 73/75 (97%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgtgagtt-cagacagtcacaagtacgtctct 64
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtgagttccagacagtcgcaagtacgtctct 60
Query: 65 acaggaatacatggg 79
|||||||||||||||
Sbjct: 61 acaggaatacatggg 75
>RF00104;mir-10;AB232922.1/86430-86356 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 85.7 bits (43), Expect = 8e-17
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgt-gagttcagacagtcacaagtacgtctct 64
||||||||||||||||||||||||||||||| |||| || || || ||| |||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtggagtacaagcattcgcaaatacgtctct 60
Query: 65 acaggaatacatggg 79
|||||||||||||||
Sbjct: 61 acaggaatacatggg 75
>RF00104;mir-10;EU025715.1/118732-118806 8030:Salmo salar
(Atlantic salmon)
Length = 75
Score = 77.8 bits (39), Expect = 2e-14
Identities = 67/75 (89%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgtgagttca-gacagtcacaagtacgtctct 64
||||||||||||||||||||||||||||||| | | | ||| || |||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgttaatagataacaatcgcaagtacgtctct 60
Query: 65 acaggaatacatggg 79
|||||||||||||||
Sbjct: 61 acaggaatacatggg 75
>RF00104;mir-10;AC145806.2/102674-102746 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 73
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgtg 37
||||||||||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;BX005254.9/84183-84108 7955:Danio rerio
(zebrafish)
Length = 76
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgt 36
|||||||||||||||||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagaaccgaatttgtgt 31
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tacgtctctacaggaatacatggg 79
||||||||||||||||||||||||
Sbjct: 53 tacgtctctacaggaatacatggg 76
>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 75
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgtgag 39
|||||| |||||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtgag 34
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 60.0 bits (30), Expect = 5e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgtgag 39
|||||||||||||||||| |||||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgtgag 34
>RF00104;mir-10;AAWZ01028329.1/91871-91943 28377:Anolis
carolinensis (green anole)
Length = 73
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 tatatgtaccctgtagaaccgaatttgtgtgag 39
|||||||||||||||||| ||||||||||||||
Sbjct: 2 tatatgtaccctgtagaatcgaatttgtgtgag 34
>RF00104;mir-10;DQ481668.1/168869-168943 31033:Takifugu rubripes
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgtga 38
|||||| ||||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtga 33
>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgtga 38
|||||| ||||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtga 33
>RF00104;mir-10;ABRQ01011010.1/8721-8795 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 56.0 bits (28), Expect = 7e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgtg 37
|||||| |||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgt 36
|||||||||||||||||| ||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 tatgtaccctgtagaaccgaatttgtgtgag 39
||||||||||||||| |||||||||||||||
Sbjct: 4 tatgtaccctgtagatccgaatttgtgtgag 34
>RF00104;mir-10;FJ356145.1/1191-1265 8022:Oncorhynchus mykiss
(rainbow trout)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgt 36
||||||| |||||||||||||||||||||||
Sbjct: 1 ctatatgcaccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;AAVX01239926.1/451-377 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgt 36
|||||| ||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgt 31
>RF00104;mir-10;ABPM01028404.1/870-945 106582:Maylandia zebra
(zebra mbuna)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgtga 38
|||||| ||||||||||||||||||| ||||||
Sbjct: 1 ctatatataccctgtagaaccgaattggtgtga 33
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgtga 38
|||||| ||||||||||| ||||||||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgtga 33
>RF00104;mir-10;BX546447.8/26541-26615 7955:Danio rerio
(zebrafish)
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgt 36
|||||| |||||||||||||||||| |||||
Sbjct: 1 ctatatataccctgtagaaccgaatgtgtgt 31
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 ctatatgtaccctgtagaaccgaatttgtgt 36
|||||| ||||||||||| ||||||||||||
Sbjct: 1 ctatatataccctgtagatccgaatttgtgt 31
