miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;BAAE01206467.1/1361-1287 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 105 bits (53), Expect = 1e-22
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 23 atacataccctgtagaaccgaatgtgtgtgcagctgacttgatcacagattgggttctag 82
|||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 3 atacataccctgtagaaccgaatgtgtgtggagctgcctcagtcacagattgggttctag 62
Query: 83 gggagtctatggg 95
|||||||||||||
Sbjct: 63 gggagtctatggg 75
>RF00104;mir-10;BX546447.8/26541-26615 7955:Danio rerio
(zebrafish)
Length = 75
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 21 ctatacataccctgtagaaccgaatgtgtgt 51
||||| |||||||||||||||||||||||||
Sbjct: 1 ctatatataccctgtagaaccgaatgtgtgt 31
>RF00104;mir-10;BAAE01096977.1/80-154 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 52.0 bits (26), Expect = 2e-06
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 21 ctatacataccctgtagaaccgaatgtgtgtgcagctgacttgatcacagattgggttct 80
||||| ||||||||||||||||||| |||||| || || |||||||||| | ||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtgaagaacgctcaatcacagattcgattct 60
Query: 81 aggggagtctatgg 94
|||||||| |||||
Sbjct: 61 aggggagtatatgg 74
>RF00104;mir-10;ABRQ01011010.1/8721-8795 9813:Procavia capensis
(cape rock hyrax)
Length = 75
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 21 ctatacataccctgtagaaccgaatgtgtgtg 52
||||| ||||||||||||||||||| ||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;FJ497007.1/255336-255410 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 75
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 21 ctatacataccctgtagaaccgaatgtgtgtg 52
||||| ||||||||||||||||||| ||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;DQ481668.1/168869-168943 31033:Takifugu rubripes
Length = 75
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 21 ctatacataccctgtagaaccgaatgtgtgtg 52
||||| ||||||||||||||||||| ||||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgtg 32
>RF00104;mir-10;AAVX01239926.1/451-377 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 21 ctatacataccctgtagaaccgaatgtgtgt 51
||||| ||||||||||||||||||| |||||
Sbjct: 1 ctatatataccctgtagaaccgaatttgtgt 31
