miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00455;mir-15;CAAB01000586.1/28074-28158 31033:Takifugu rubripes
Length = 85
Score = 117 bits (59), Expect = 2e-26
Identities = 68/71 (95%)
Strand = Plus / Plus
Query: 1 ctggtgatgctgtagcagcacggaatggtttgtgagttacactgagatacaagccatgct 60
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||
Sbjct: 3 ctggtgatgctgtagcagcacggaatggtttgtgggttacactgagatacaggccatact 62
Query: 61 gtgctgccgca 71
|||||||||||
Sbjct: 63 gtgctgccgca 73
>RF00455;mir-15;BAAE01057882.1/4-73 8090:Oryzias latipes (Japanese
medaka)
Length = 70
Score = 79.8 bits (40), Expect = 4e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 8 tgctgtagcagcacggaatggtttgtgagttacactgagatacaagccatgctgtgctgc 67
||||||||||||||||||||||||||| |||| |||||| || |||||||||||||||
Sbjct: 1 tgctgtagcagcacggaatggtttgtgggttattgtgagatgcaggccatgctgtgctgc 60
Query: 68 cgca 71
||||
Sbjct: 61 cgca 64
>RF00455;mir-15;BX294379.5/157235-157150 7955:Danio rerio
(zebrafish)
Length = 86
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 10 ctgtagcagcacggaatggtttgtgagtta 39
|||||||||||| |||||||||||||||||
Sbjct: 12 ctgtagcagcacagaatggtttgtgagtta 41
>RF00455;mir-15;AAVX01075355.1/1195-1112 7868:Callorhinchus milii
(ghost shark)
Length = 84
Score = 52.0 bits (26), Expect = 9e-07
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 11 tgtagcagcacggaatggtttgtgagttacactgagatacaagccatgctgtgctgcc 68
||||||||||| ||||||||||||||| | |||||||| |||||| |||||||||
Sbjct: 13 tgtagcagcacataatggtttgtgagttgtatggagatacaggccatgttgtgctgcc 70
>RF00455;mir-15;CU151883.12/129517-129600 7955:Danio rerio
(zebrafish)
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 3 ggtgatgctgtagcagcacggaatggtttgtg 34
||||||| ||||||||||| ||||||||||||
Sbjct: 5 ggtgatggtgtagcagcacagaatggtttgtg 36