miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00455;mir-15;CAAB01000586.1/28074-28158 31033:Takifugu rubripes
          Length = 85

 Score =  117 bits (59), Expect = 2e-26
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  ctggtgatgctgtagcagcacggaatggtttgtgagttacactgagatacaagccatgct 60
          |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||
Sbjct: 3  ctggtgatgctgtagcagcacggaatggtttgtgggttacactgagatacaggccatact 62

                     
Query: 61 gtgctgccgca 71
          |||||||||||
Sbjct: 63 gtgctgccgca 73




>RF00455;mir-15;BAAE01057882.1/4-73 8090:Oryzias latipes (Japanese
          medaka)
          Length = 70

 Score = 79.8 bits (40), Expect = 4e-15
 Identities = 58/64 (90%)
 Strand = Plus / Plus

                                                                      
Query: 8  tgctgtagcagcacggaatggtttgtgagttacactgagatacaagccatgctgtgctgc 67
          ||||||||||||||||||||||||||| ||||   |||||| || |||||||||||||||
Sbjct: 1  tgctgtagcagcacggaatggtttgtgggttattgtgagatgcaggccatgctgtgctgc 60

              
Query: 68 cgca 71
          ||||
Sbjct: 61 cgca 64




>RF00455;mir-15;BX294379.5/157235-157150 7955:Danio rerio
          (zebrafish)
          Length = 86

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 10 ctgtagcagcacggaatggtttgtgagtta 39
          |||||||||||| |||||||||||||||||
Sbjct: 12 ctgtagcagcacagaatggtttgtgagtta 41




>RF00455;mir-15;AAVX01075355.1/1195-1112 7868:Callorhinchus milii
          (ghost shark)
          Length = 84

 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 50/58 (86%)
 Strand = Plus / Plus

                                                                    
Query: 11 tgtagcagcacggaatggtttgtgagttacactgagatacaagccatgctgtgctgcc 68
          |||||||||||  |||||||||||||||  |  |||||||| |||||| |||||||||
Sbjct: 13 tgtagcagcacataatggtttgtgagttgtatggagatacaggccatgttgtgctgcc 70




>RF00455;mir-15;CU151883.12/129517-129600 7955:Danio rerio
          (zebrafish)
          Length = 84

 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                          
Query: 3  ggtgatgctgtagcagcacggaatggtttgtg 34
          ||||||| ||||||||||| ||||||||||||
Sbjct: 5  ggtgatggtgtagcagcacagaatggtttgtg 36