miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 149 bits (75), Expect = 7e-36
Identities = 81/83 (97%)
Strand = Plus / Plus
Query: 2 tctgtgtattgccaaagtgcttacagtgcaggtagtactatgtaacacctactgcaatgg 61
|||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 1 tctgtgtattgccaaagtgcttacagtgcaggtagttctatgtgacacctactgcaatgg 60
Query: 62 aggcacttacagcagtactcttg 84
|||||||||||||||||||||||
Sbjct: 61 aggcacttacagcagtactcttg 83
>RF00051;mir-17;AANH01000396.1/151542-151460 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 115 bits (58), Expect = 9e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 2 tctgtgtattgccaaagtgcttacagtgcaggtagtactatgtaacacctactgcaatgg 61
||||||||||| |||||||||||||||||||||||||||||| || |||||||||| |||
Sbjct: 1 tctgtgtattgtcaaagtgcttacagtgcaggtagtactatgcaatacctactgcagtgg 60
Query: 62 aggcacttacagca 75
||||||||||||||
Sbjct: 61 aggcacttacagca 74
>RF00051;mir-17;BAAF04006740.1/10494-10412 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 95.6 bits (48), Expect = 9e-20
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 4 tgtgtattgccaaagtgcttacagtgcaggtagtactatgtaacacctactgcaatggag 63
||||||||| |||||||||||||||||||||||||| | || |||||||||| |||||
Sbjct: 3 tgtgtattgtcaaagtgcttacagtgcaggtagtacatttaaatacctactgcagtggag 62
Query: 64 gcacttacagcagtac 79
||||||||||||||||
Sbjct: 63 gcacttacagcagtac 78
>RF00051;mir-17;CAAK05029381.1/11768-11850 7955:Danio rerio
(zebrafish)
Length = 83
Score = 79.8 bits (40), Expect = 5e-15
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 6 tgtattgccaaagtgcttacagtgcaggtagtactatgtaacacctactgcaatggaggc 65
||||||| ||||||||||||||||||||||||| |||| || | |||||||| |||||||
Sbjct: 5 tgtattgtcaaagtgcttacagtgcaggtagtattatggaatatctactgcagtggaggc 64
Query: 66 actt 69
||||
Sbjct: 65 actt 68
>RF00051;mir-17;AADN02029366.1/35604-35522 9031:Gallus gallus
(chicken)
Length = 83
Score = 56.0 bits (28), Expect = 7e-08
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 14 caaagtgcttacagtgcaggtagtactatgtaacacctactgcaatggaggcactt 69
|||||||||||||||||||||||| ||| || |||||||||| || ||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcactt 68
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 49/56 (87%), Gaps = 2/56 (3%)
Strand = Plus / Plus
Query: 14 caaagtgcttacagtgcaggtagtactatgtaacacctactgcaatggaggcactt 69
|||||||||||||||||||||||| | || || | |||||||| |||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagttcaatata--atctactgcagtggaggcactt 66
>RF00051;mir-17;AAHX01085677.1/1620-1701 10116:Rattus norvegicus
(Norway rat)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 caaagtgcttacagtgcaggtagt 37
||||||||||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 caaagtgcttacagtgcaggtagt 37
||||||||||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 caaagtgcttacagtgcaggtagt 37
||||||||||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 caaagtgcttacagtgcaggtagt 37
||||||||||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 caaagtgcttacagtgcaggtagt 37
||||||||||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AAPN01018584.1/1527-1606 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;ABQF01018395.1/1087-1166 59729:Taeniopygia guttata
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02013295.1/455-376 9031:Gallus gallus
(chicken)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
