miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00051;mir-17;AANH01005312.1/96166-96086 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 115 bits (58), Expect = 9e-26
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 9 agtgtcaaagtgcttacagtgcaggtagttaaaagaaatctactgcagtgaaggcacttt 68
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 8 agtgtcaaagtgcttacagtgcaggtagttttatcaaatctactgcagtgaaggcacttt 67
Query: 69 cagcactattctga 82
||||||||||||||
Sbjct: 68 cagcactattctga 81
>RF00051;mir-17;CAAB01000095.1/5425-5345 31033:Takifugu rubripes
Length = 81
Score = 111 bits (56), Expect = 1e-24
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 7 gtagtgtcaaagtgcttacagtgcaggtagttaaaagaaatctactgcagtgaaggcact 66
|||||||||||||||||||||||||||||||| | || |||||||||||||||||||||
Sbjct: 6 gtagtgtcaaagtgcttacagtgcaggtagtttgatgacatctactgcagtgaaggcact 65
Query: 67 ttcagcactattctga 82
|||||| |||||||||
Sbjct: 66 ttcagcgctattctga 81
>RF00051;mir-17;BAAF04019480.1/14298-14217 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 93.7 bits (47), Expect = 3e-19
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 2 tcaccgtagtgtcaaagtgcttacagtgcaggtag-ttaaaagaaatctactgcagtgaa 60
|||| |||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 1 tcactgtagtgtcaaagtgcttacagtgcaggtagttttctaaaaatctactgcagtgaa 60
Query: 61 ggcactttcagcact 75
|||||||||||||||
Sbjct: 61 ggcactttcagcact 75
>RF00051;mir-17;CAAK05051440.1/16292-16212 7955:Danio rerio
(zebrafish)
Length = 81
Score = 83.8 bits (42), Expect = 3e-16
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 2 tcaccgtagtgtcaaagtgcttacagtgcaggtagttaaaagaaatctactgcagtgaag 61
|||| |||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 1 tcactgtagtgtcaaagtgcttacagtgcaggtagttcaatataatctactgcagtggag 60
Query: 62 gcactt 67
||||||
Sbjct: 61 gcactt 66
>RF00051;mir-17;AAVX01531971.1/673-753 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 65.9 bits (33), Expect = 7e-11
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagttaaaagaaatctactgcagtgaaggcactt 67
||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagtgtcttaaaatctactgcagtgaaggcactt 66
>RF00051;mir-17;AADN02029366.1/35604-35522 9031:Gallus gallus
(chicken)
Length = 83
Score = 56.0 bits (28), Expect = 7e-08
Identities = 52/59 (88%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt--taaaagaaatctactgcagtgaaggcactt 67
||||||||||||||||||||||||||| || | || ||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagtgatatatagaacctactgcagtgaaggcactt 68
>RF00051;mir-17;AAHX01085677.1/1620-1701 10116:Rattus norvegicus
(Norway rat)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 atctactgcagtgaaggcactt 67
||||||||||||||||||||||
Sbjct: 46 atctactgcagtgaaggcactt 67
>RF00051;mir-17;CAAK05029381.1/11768-11850 7955:Danio rerio
(zebrafish)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AANH01000396.1/151542-151460 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;BAAF04006740.1/10494-10412 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 11 tgtcaaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||||||
Sbjct: 10 tgtcaaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;ABRQ01318668.1/84-4 9813:Procavia capensis (cape
rock hyrax)
Length = 81
Score = 50.1 bits (25), Expect = 4e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagttaaaagaaatctactgca 55
|||||||||||||||||||||||| ||| ||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagttttcagagatctactgca 54
>RF00051;mir-17;CAAB01003114.1/25632-25550 31033:Takifugu rubripes
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 caaagtgcttacagtgcaggtagtt 38
|||||||||||||||||||||||||
Sbjct: 13 caaagtgcttacagtgcaggtagtt 37
>RF00051;mir-17;AAWZ01041388.1/821-905 28377:Anolis carolinensis
(green anole)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 9 agtgtcaaagtgcttacagtgcaggtagttaa 40
|||||||||||||| | |||||||||||||||
Sbjct: 8 agtgtcaaagtgctcatagtgcaggtagttaa 39
>RF00051;mir-17;CAAE01014998.1/174612-174696 99883:Tetraodon
nigroviridis
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;ABPJ01055347.1/275-359 35575:Mchenga conophoros
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;BAAF04070900.1/19468-19386 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtagt 37
|||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtagt 36
>RF00051;mir-17;AAPN01018584.1/1527-1606 9258:Ornithorhynchus
anatinus (platypus)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;ABQF01018395.1/1087-1166 59729:Taeniopygia guttata
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
>RF00051;mir-17;AADN02013295.1/455-376 9031:Gallus gallus
(chicken)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 aaagtgcttacagtgcaggtag 36
||||||||||||||||||||||
Sbjct: 14 aaagtgcttacagtgcaggtag 35
