miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34550_fru-mir-18:mirbase
Length = 76
Score = 151 bits (76), Expect = 8e-38
Identities = 76/76 (100%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 61 ctccttctggcataag 76
||||||||||||||||
Sbjct: 61 ctccttctggcataag 76
>34211_dre-mir-18a:mirbase
Length = 83
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
Query: 61 ctccttctggca 72
||||||||||||
Sbjct: 65 ctccttctggca 76
>34212_dre-mir-18b:mirbase
Length = 87
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 4 tgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctc 63
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 10 tgctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgccc 69
Query: 64 cttctggcataag 76
|||||||||||||
Sbjct: 70 cttctggcataag 82
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 11 ttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtg 70
Query: 61 ctccttctggcataag 76
||||||||||||||||
Sbjct: 71 ctccttctggcataag 86
>32664_rno-mir-18a:mirbase
Length = 96
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 11 ttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtg 70
Query: 61 ctccttctggcataag 76
||||||||||||||||
Sbjct: 71 ctccttctggcataag 86
>25899_gga-mir-18a:mirbase
Length = 93
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
|||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 8 ttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 67
Query: 61 ctccttctggcataag 76
||||||||||||||||
Sbjct: 68 ctccttctggcataag 83
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
|||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 8 ttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 67
Query: 61 ctccttctggcataag 76
||||||||||||||||
Sbjct: 68 ctccttctggcataag 83
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 119 bits (60), Expect = 3e-28
Identities = 72/76 (94%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
|||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 8 ttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 67
Query: 61 ctccttctggcataag 76
||||||||||||||||
Sbjct: 68 ctccttctggcataag 83
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
|||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 8 ttgtcctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 67
Query: 61 ctccttctggcataa 75
|||||||||||||||
Sbjct: 68 ctccttctggcataa 82
>27337_mdo-mir-18:mirbase
Length = 72
Score = 111 bits (56), Expect = 7e-26
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
|||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 1 ttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 60
Query: 61 ctccttctggca 72
||||||||||||
Sbjct: 61 ctccttctggca 72
>27483_age-mir-18:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 66 tctggca 72
|||||||
Sbjct: 65 tctggca 71
>27544_lla-mir-18:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 66 tctggca 72
|||||||
Sbjct: 65 tctggca 71
>27592_sla-mir-18:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 66 tctggca 72
|||||||
Sbjct: 65 tctggca 71
>27656_mml-mir-18:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 66 tctggca 72
|||||||
Sbjct: 65 tctggca 71
>28175_mne-mir-18:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 66 tctggca 72
|||||||
Sbjct: 65 tctggca 71
>28263_ggo-mir-18:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 66 tctggca 72
|||||||
Sbjct: 65 tctggca 71
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 66 tctggca 72
|||||||
Sbjct: 65 tctggca 71
>30047_ppa-mir-18:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 66 tctggca 72
|||||||
Sbjct: 65 tctggca 71
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 66 tctggca 72
|||||||
Sbjct: 65 tctggca 71
>30757_ppy-mir-18:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 66 tctggca 72
|||||||
Sbjct: 65 tctggca 71
>31397_lca-mir-18:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 66 tctggca 72
|||||||
Sbjct: 65 tctggca 71
>33134_bta-mir-18a:mirbase
Length = 71
Score = 109 bits (55), Expect = 3e-25
Identities = 64/67 (95%)
Strand = Plus / Plus
Query: 6 ctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcct 65
|||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 66 tctggca 72
|||||||
Sbjct: 65 tctggca 71
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 64/68 (94%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
|||| |||||||||||||||||||||||||||| |||| ||||| |||||||||||||||
Sbjct: 5 ttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 64
Query: 61 ctccttct 68
||||||||
Sbjct: 65 ctccttct 72
>26950_eca-mir-18a:mirbase
Length = 61
Score = 97.6 bits (49), Expect = 1e-21
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 7 taaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctcctt 66
||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 60
Query: 67 c 67
|
Sbjct: 61 c 61
>25656_xla-mir-18:mirbase
Length = 79
Score = 79.8 bits (40), Expect = 2e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
||||| ||||||||||||||||||| |||||| |||| ||||| |||||||||||| ||
Sbjct: 3 ttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatg 62
Query: 61 ctccttctggca 72
|||||| |||||
Sbjct: 63 ctccttttggca 74
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 79.8 bits (40), Expect = 2e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
||||| ||||||||||||||||||| |||||| |||| ||||| |||||||||||| ||
Sbjct: 3 ttgtgttaaggtgcatctagtgcagttagtgacatagtgtagcatctactgccctaaatg 62
Query: 61 ctccttctggca 72
|||||| |||||
Sbjct: 63 ctccttttggca 74
>31432_oan-mir-18:mirbase
Length = 130
Score = 79.8 bits (40), Expect = 2e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
||||| ||||||||||||||||||| ||||||| ||| ||| | |||||||||||| ||
Sbjct: 23 ttgtgttaaggtgcatctagtgcagttagtgaagtagcttagaatctactgccctaaatg 82
Query: 61 ctccttctggca 72
||||||||||||
Sbjct: 83 ctccttctggca 94
>25900_gga-mir-18b:mirbase
Length = 84
Score = 71.9 bits (36), Expect = 6e-14
Identities = 63/72 (87%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
||||| ||||||||||||||||||| |||||| ||| ||| | |||||||||||| ||
Sbjct: 9 ttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatg 68
Query: 61 ctccttctggca 72
||||||||||||
Sbjct: 69 ctccttctggca 80
>33135_bta-mir-18b:mirbase
Length = 75
Score = 63.9 bits (32), Expect = 1e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
||||| ||||||||||||||||||| ||||||| || || | |||||||||||| ||
Sbjct: 2 ttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatg 61
Query: 61 ctccttctggca 72
||||||||||||
Sbjct: 62 ctccttctggca 73
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 1e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
||||| ||||||||||||||||||| ||||||| || ||| | |||||||||||| ||
Sbjct: 5 ttgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatg 64
Query: 61 ctccttctggca 72
| ||||||||||
Sbjct: 65 ccccttctggca 76
>27657_mml-mir-18b:mirbase
Length = 71
Score = 61.9 bits (31), Expect = 6e-11
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 2 tgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgc 61
|||| ||||||||||||||||||| ||||||| || ||| | |||||||||||| |||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 62 tccttctggca 72
||||||||||
Sbjct: 61 cccttctggca 71
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 61.9 bits (31), Expect = 6e-11
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 2 tgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgc 61
|||| ||||||||||||||||||| ||||||| || ||| | |||||||||||| |||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 62 tccttctggca 72
||||||||||
Sbjct: 61 cccttctggca 71
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 61.9 bits (31), Expect = 6e-11
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 2 tgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgc 61
|||| ||||||||||||||||||| ||||||| || ||| | |||||||||||| |||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 62 tccttctggca 72
||||||||||
Sbjct: 61 cccttctggca 71
>25433_pma-mir-18a:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagt 30
||||||||||||||||||||||||||||||
Sbjct: 12 ttgtgctaaggtgcatctagtgcagatagt 41
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 54.0 bits (27), Expect = 1e-08
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 2 tgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgc 61
|||| ||||||||||||||||||| ||||||| | ||| |||||||||||||| |||
Sbjct: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
Query: 62 tccttctggca 72
||||| ||||
Sbjct: 63 cccttccggca 73
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 6e-08
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 2 tgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgc 61
|||| ||||||||||||||||||| ||||||| || ||| | |||||||||||| |||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 62 tccttctggc 71
|| ||||||
Sbjct: 61 cccatctggc 70
>26405_tgu-mir-18b:mirbase
Length = 132
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtga 32
||||| ||||||||||||||||||| ||||||
Sbjct: 95 ttgtgttaaggtgcatctagtgcagttagtga 126
>26951_eca-mir-18b:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 taaggtgcatctagtgcagatagtgaa 33
||||||||||||||||||| |||||||
Sbjct: 1 taaggtgcatctagtgcagttagtgaa 27
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 5e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1 ttgtgctaaggtgcatctagtgcagatagtgaa 33
||||| ||||||||||||||||| | |||||||
Sbjct: 5 ttgtgttaaggtgcatctagtgctgttagtgaa 37
>34213_dre-mir-18c:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 4 tgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgc 52
||||||||||||||| ||| || ||||||| ||| |||| | |||||||
Sbjct: 8 tgctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
>25434_pma-mir-18b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 aaggtgcatctagtgcagatagtg 31
||||||||| ||||||||||||||
Sbjct: 16 aaggtgcatttagtgcagatagtg 39
