miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
          (castor bean)
          Length = 343

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 12 tttgagagattgaagctgccaacatgatct 41
          ||||||||||||||||||||| ||||||||
Sbjct: 4  tttgagagattgaagctgccagcatgatct 33




>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
          trichocarpa
          Length = 435

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 12 tttgagagattgaagctgccaacatgatct 41
          |||||||| |||||||||||| ||||||||
Sbjct: 4  tttgagaggttgaagctgccagcatgatct 33



 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 29/30 (96%), Gaps = 1/30 (3%)
 Strand = Plus / Plus

                                         
Query: 187 caggtcatccttgcagcttcaatcactcat 216
           ||||||||| ||||||||||||||||||||
Sbjct: 404 caggtcatc-ttgcagcttcaatcactcat 432




>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
          Length = 436

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 12 tttgagagattgaagctgccaacatgatct 41
          |||||||| |||||||||||| ||||||||
Sbjct: 4  tttgagaggttgaagctgccagcatgatct 33




>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
          Length = 154

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 12 tttgagagattgaagctgccaacatgatct 41
          |||||||| |||||||||||| ||||||||
Sbjct: 4  tttgagaggttgaagctgccagcatgatct 33




>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
          Length = 354

 Score = 44.1 bits (22), Expect = 8e-04
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 12 tttgagagattgaagctgccaacatgatct 41
          |||||||| |||||||||||| ||||||||
Sbjct: 4  tttgagaggttgaagctgccagcatgatct 33