miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34554_fru-mir-21:mirbase
Length = 73
Score = 137 bits (69), Expect = 2e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 32 tgtcaaatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctga 91
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtcaaatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgt 60
Query: 92 aggctgtctgaca 104
|||||||||||||
Sbjct: 61 aggctgtctgaca 73
>34220_dre-mir-21-1:mirbase
Length = 148
Score = 89.7 bits (45), Expect = 4e-19
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 32 tgtcaaatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctga 91
||||| ||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 42 tgtcagatagcttatcagactggtgttggctgttacattcgcccggcgacaacagtctgt 101
Query: 92 aggctgtctgacatttcgggc 112
|||||||||||||||| ||||
Sbjct: 102 aggctgtctgacattttgggc 122
>25905_gga-mir-21:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 1e-07
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 38 atagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgaaggctg 97
|||||||||||||||| ||||| ||||| ||| || ||| ||||||||| | ||||||
Sbjct: 17 atagcttatcagactgatgttgactgtt-ggatctcatggcaacaacagtcggtaggctg 75
Query: 98 tctgacattt 107
||||||||||
Sbjct: 76 tctgacattt 85
>34221_dre-mir-21-2:mirbase
Length = 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 tagcttatcagactggtgttggct 62
||||||||||||||||||||||||
Sbjct: 34 tagcttatcagactggtgttggct 57
>31438_oan-mir-21:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 9e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 38 atagcttatcagactggtgttggctgtta 66
|||||||||||||||| ||||| ||||||
Sbjct: 28 atagcttatcagactgatgttgactgtta 56
>26411_tgu-mir-21:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 38 atagcttatcagactggtgttggctgtt 65
|||||||||||||||| ||||| |||||
Sbjct: 10 atagcttatcagactgatgttgactgtt 37
>27341_mdo-mir-21:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 38 atagcttatcagactggtgttggctgtt 65
|||||||||||||||| ||||| |||||
Sbjct: 7 atagcttatcagactgatgttgactgtt 34
>31787_mmu-mir-21:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 38 atagcttatcagactggtgttggctgtt 65
|||||||||||||||| ||||| |||||
Sbjct: 17 atagcttatcagactgatgttgactgtt 44
