miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00658;mir-21;BAAF04044466.1/2035-1963 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 129 bits (65), Expect = 9e-30
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 32 tgtcaaatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctga 91
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtcagatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgt 60
Query: 92 aggctgtctgaca 104
|||||||||||||
Sbjct: 61 aggctgtctgaca 73
>RF00658;mir-21;AAVX01193435.1/262-191 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 32 tgtcaaatagcttatcagactggtgttggctgtta 66
||||| |||||||||||||||||||||||||||||
Sbjct: 1 tgtcagatagcttatcagactggtgttggctgtta 35
>RF00658;mir-21;CAAB01003431.1/24512-24584 31033:Takifugu rubripes
Length = 73
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 38 atagcttatcagactggtgttggctgtta 66
|||||||||||||||||||||||||||||
Sbjct: 7 atagcttatcagactggtgttggctgtta 35
>RF00658;mir-21;AANH01008078.1/292800-292872 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 73
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 39 tagcttatcagactggtgttggctgtt 65
|||||||||||||||||||||||||||
Sbjct: 8 tagcttatcagactggtgttggctgtt 34
>RF00658;mir-21;CR848791.15/19987-19917 7955:Danio rerio
(zebrafish)
Length = 71
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 39 tagcttatcagactggtgttggct 62
||||||||||||||||||||||||
Sbjct: 8 tagcttatcagactggtgttggct 31
>RF00658;mir-21;AADN02025785.1/47934-47863 9031:Gallus gallus
(chicken)
Length = 72
Score = 46.1 bits (23), Expect = 1e-04
Identities = 57/67 (85%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 38 atagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgaaggctg 97
|||||||||||||||| ||||| ||||| ||| || ||| ||||||||| | ||||||
Sbjct: 7 atagcttatcagactgatgttgactgtt-ggatctcatggcaacaacagtcggtaggctg 65
Query: 98 tctgaca 104
|||||||
Sbjct: 66 tctgaca 72
>RF00658;mir-21;BAAF04048171.1/11412-11340 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 tagcttatcagactggtgttgg 60
||||||||||||||||||||||
Sbjct: 8 tagcttatcagactggtgttgg 29
