miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34555_fru-mir-22a:mirbase
Length = 86
Score = 155 bits (78), Expect = 6e-39
Identities = 81/82 (98%)
Strand = Plus / Plus
Query: 1 gccgacctacagcagttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1 gccgacctacagcagttcttcactggcaagctttatgtcctcgtgcaacagctaaagctg 60
Query: 61 ccagctgaagaactgttgtggt 82
||||||||||||||||||||||
Sbjct: 61 ccagctgaagaactgttgtggt 82
>34222_dre-mir-22a:mirbase
Length = 86
Score = 117 bits (59), Expect = 1e-27
Identities = 74/79 (93%)
Strand = Plus / Plus
Query: 4 gacctacagcagttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgcca 63
||||| |||||||||||||||||||||||||||||||| ||| | | |||||||||||||
Sbjct: 4 gacctgcagcagttcttcactggcaagctttatgtccttgtgtaccagctaaagctgcca 63
Query: 64 gctgaagaactgttgtggt 82
|||||||||||||||||||
Sbjct: 64 gctgaagaactgttgtggt 82
>25906_gga-mir-22:mirbase
Length = 100
Score = 65.9 bits (33), Expect = 4e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 10 cagcagttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaa 69
||||||||||||| |||||||||||||||||| | | |||||||||||||| ||||
Sbjct: 17 cagcagttcttcagtggcaagctttatgtccttctctagtagctaaagctgccagttgaa 76
Query: 70 gaactgttg 78
|||||||||
Sbjct: 77 gaactgttg 85
>27597_sla-mir-22:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 7e-11
Identities = 57/65 (87%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| |||||||||||||||||| | |||||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcct---gaccccgctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>31439_oan-mir-22:mirbase
Length = 122
Score = 61.9 bits (31), Expect = 7e-11
Identities = 62/70 (88%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 9 acagcagttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctga 68
|||||||||||||| |||||||||||| ||||| || | | |||||||||||||| |||
Sbjct: 31 acagcagttcttcagtggcaagctttacgtcct-gtcc--cagctaaagctgccagttga 87
Query: 69 agaactgttg 78
||||||||||
Sbjct: 88 agaactgttg 97
>26958_eca-mir-22:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>27489_age-mir-22:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>27549_lla-mir-22:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>27664_mml-mir-22:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>28181_mne-mir-22:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>28373_hsa-mir-22:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>30053_ppa-mir-22:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>30160_ptr-mir-22:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>30765_ppy-mir-22:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>31402_lca-mir-22:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>31788_mmu-mir-22:mirbase
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 19 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 75
Query: 74 tgttg 78
|||||
Sbjct: 76 tgttg 80
>32672_rno-mir-22:mirbase
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 19 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 75
Query: 74 tgttg 78
|||||
Sbjct: 76 tgttg 80
>33142_bta-mir-22:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>33143_bta-mir-22:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 15 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 71
Query: 74 tgttg 78
|||||
Sbjct: 72 tgttg 76
>33790_bta-mir-3600:mirbase
Length = 81
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Minus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| |||||||||||||||||| || |||||||||||||| ||||||||
Sbjct: 69 agttcttcagtggcaagctttatgtcctgaccca---gctaaagctgccagttgaagaac 13
Query: 74 tgttg 78
|||||
Sbjct: 12 tgttg 8
>33924_ssc-mir-22:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 11 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 67
Query: 74 tgttg 78
|||||
Sbjct: 68 tgttg 72
>33925_ssc-mir-22:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 2e-08
Identities = 56/65 (86%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 11 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 67
Query: 74 tgttg 78
|||||
Sbjct: 68 tgttg 72
>34704_tni-mir-22b:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 15 gttcttcactggcaagctttatgtcct-cgtgcaaccgctaaagctgccagctgaagaac 73
||||||||||||| ||||||||||||| || | ||||||||||||||| |||||| |
Sbjct: 15 gttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttgaagagc 74
Query: 74 tgttgtg 80
|||||||
Sbjct: 75 tgttgtg 81
>34556_fru-mir-22b:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 6e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 15 gttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaact 74
||||||||||||| |||||||||||||| | |||||||||||||| |||||| ||
Sbjct: 15 gttcttcactggctagctttatgtcctctgacccatgctaaagctgccagttgaagagct 74
Query: 75 gttgtg 80
||||||
Sbjct: 75 gttgtg 80
>26636_cfa-mir-22:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 3e-07
Identities = 54/63 (85%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 14 agttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctgaagaac 73
||||||||| ||||||||||||||||| || | |||||||||||||| ||||||||
Sbjct: 1 agttcttcagtggcaagctttatgtcc---tgacccagctaaagctgccagttgaagaac 57
Query: 74 tgt 76
|||
Sbjct: 58 tgt 60
>25712_xtr-mir-22:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 agcagttcttcactggcaagctttatgt 38
|||||||||||| |||||||||||||||
Sbjct: 14 agcagttcttcagtggcaagctttatgt 41
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 51 gctaaagctgccagctgaagaactgttg 78
|||||||||||||| |||||||||||||
Sbjct: 53 gctaaagctgccagttgaagaactgttg 80
>27342_mdo-mir-22:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 58/67 (86%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 9 acagcagttcttcactggcaagctttatgtcctcgtgcaaccgctaaagctgccagctga 68
|||||||||||||| |||| |||||||||| || || | | |||||||||||||| |||
Sbjct: 8 acagcagttcttcagtggcgagctttatgt-cttgtcc--cagctaaagctgccagttga 64
Query: 69 agaactg 75
|||||||
Sbjct: 65 agaactg 71
>34223_dre-mir-22b:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 53 taaagctgccagctgaagaactgttgtgg 81
|||||||||||| |||||| |||||||||
Sbjct: 49 taaagctgccagttgaagagctgttgtgg 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 gttcttcactggcaagctttatgt 38
||||||||||||| ||||||||||
Sbjct: 15 gttcttcactggctagctttatgt 38
