miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34556_fru-mir-22b:mirbase
Length = 86
Score = 141 bits (71), Expect = 9e-35
Identities = 84/87 (96%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 gttgcctcacagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagct 60
|||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct: 1 gttgcctcacagtcgttcttcactggctagctttatgtcctctga-cccatgctaaagct 59
Query: 61 gccagttgaagagctgttgtgtgtaac 87
|||||||||||||||||||||||||||
Sbjct: 60 gccagttgaagagctgttgtgtgtaac 86
>34223_dre-mir-22b:mirbase
Length = 82
Score = 73.8 bits (37), Expect = 2e-14
Identities = 70/81 (86%), Gaps = 5/81 (6%)
Strand = Plus / Plus
Query: 7 tcacagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagt 66
|||||||||||||||||||||||||||||||| | | ||| |||||||||||||
Sbjct: 7 tcacagtcgttcttcactggctagctttatgt-----ggcagcaccttaaagctgccagt 61
Query: 67 tgaagagctgttgtgtgtaac 87
||||||||||||||| |||||
Sbjct: 62 tgaagagctgttgtgggtaac 82
>27597_sla-mir-22:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| |||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gacccc--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>26958_eca-mir-22:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>27489_age-mir-22:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>27549_lla-mir-22:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>27664_mml-mir-22:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>28181_mne-mir-22:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>28373_hsa-mir-22:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>30053_ppa-mir-22:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>30160_ptr-mir-22:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>30765_ppy-mir-22:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>31402_lca-mir-22:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>31788_mmu-mir-22:mirbase
Length = 95
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 15 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 70
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 71 agaactgttg 80
>32672_rno-mir-22:mirbase
Length = 95
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 15 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 70
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 71 agaactgttg 80
>33142_bta-mir-22:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>33143_bta-mir-22:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>33790_bta-mir-3600:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Minus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 73 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 18
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 17 agaactgttg 8
>33924_ssc-mir-22:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 7 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 62
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 63 agaactgttg 72
>33925_ssc-mir-22:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 7 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 62
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 63 agaactgttg 72
>34555_fru-mir-22a:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 15 gttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttgaagagc 74
||||||||||||| |||||||||||||| | || |||||||||||||| |||||| |
Sbjct: 15 gttcttcactggcaagctttatgtcctcgtgcaaca-gctaaagctgccagctgaagaac 73
Query: 75 tgttgtg 81
|||||||
Sbjct: 74 tgttgtg 80
>34703_tni-mir-22a:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 15 gttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttgaagagc 74
||||||||||||| ||||||||||||| || | ||||||||||||||| |||||| |
Sbjct: 15 gttcttcactggcaagctttatgtcct-cgtgcaaccgctaaagctgccagctgaagaac 73
Query: 75 tgttgtg 81
|||||||
Sbjct: 74 tgttgtg 80
>26636_cfa-mir-22:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 3e-07
Identities = 55/63 (87%), Gaps = 4/63 (6%)
Strand = Plus / Plus
Query: 15 gttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttgaagagc 74
|||||||| |||| ||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct: 2 gttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttgaagaac 57
Query: 75 tgt 77
|||
Sbjct: 58 tgt 60
>25441_pma-mir-22b:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 ctaaagctgccagttgaagagctg 76
||||||||||||||||||||||||
Sbjct: 50 ctaaagctgccagttgaagagctg 73
>25712_xtr-mir-22:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 gctaaagctgccagttgaagagctgttg 79
||||||||||||||||||||| ||||||
Sbjct: 53 gctaaagctgccagttgaagaactgttg 80
>25906_gga-mir-22:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 gctaaagctgccagttgaagagctgttg 79
||||||||||||||||||||| ||||||
Sbjct: 58 gctaaagctgccagttgaagaactgttg 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 15 gttcttcactggctagctttatgtcct 41
|||||||| |||| |||||||||||||
Sbjct: 22 gttcttcagtggcaagctttatgtcct 48
>31439_oan-mir-22:mirbase
Length = 122
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 gctaaagctgccagttgaagagctgttg 79
||||||||||||||||||||| ||||||
Sbjct: 70 gctaaagctgccagttgaagaactgttg 97
>34222_dre-mir-22a:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gttcttcactggctagctttatgtcct 41
||||||||||||| |||||||||||||
Sbjct: 15 gttcttcactggcaagctttatgtcct 41
>25440_pma-mir-22a:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 taaagctgccagttgaagagct 75
||||||||||||||||||||||
Sbjct: 58 taaagctgccagttgaagagct 79
>27342_mdo-mir-22:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 gctaaagctgccagttgaaga 72
|||||||||||||||||||||
Sbjct: 47 gctaaagctgccagttgaaga 67
>24653_bfl-mir-22:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 55 aaagctgccagttgaagagctgt 77
||||||||||| |||||||||||
Sbjct: 51 aaagctgccagatgaagagctgt 73
