miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00653;mir-22;CAAE01014999.1/1459406-1459318 99883:Tetraodon
nigroviridis
Length = 89
Score = 172 bits (87), Expect = 5e-43
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gttgcctcacagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gttgcctcacagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagct 61
Query: 61 gccagttgaagagctgttgtgtgtaac 87
|||||||||||||||||||||||||||
Sbjct: 62 gccagttgaagagctgttgtgtgtaac 88
>RF00653;mir-22;BAAF04020956.1/20-107 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 125 bits (63), Expect = 1e-28
Identities = 82/87 (94%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 gttgcctcacagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagct 60
|||||||||||||||||||||||||||||||||||||||| || |||||| |||||||
Sbjct: 2 gttgcctcacagtcgttcttcactggctagctttatgtcccacg-ccccaccgtaaagct 60
Query: 61 gccagttgaagagctgttgtgtgtaac 87
|||||||||||||||||||||||||||
Sbjct: 61 gccagttgaagagctgttgtgtgtaac 87
>RF00653;mir-22;CT030218.5/50207-50290 7955:Danio rerio
(zebrafish)
Length = 84
Score = 73.8 bits (37), Expect = 3e-13
Identities = 70/81 (86%), Gaps = 5/81 (6%)
Strand = Plus / Plus
Query: 7 tcacagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagt 66
|||||||||||||||||||||||||||||||| | | ||| |||||||||||||
Sbjct: 8 tcacagtcgttcttcactggctagctttatgt-----ggcagcaccttaaagctgccagt 62
Query: 67 tgaagagctgttgtgtgtaac 87
||||||||||||||| |||||
Sbjct: 63 tgaagagctgttgtgggtaac 83
>RF00653;mir-22;AAGU02129422.1/1672-1588 9785:Loxodonta africana
(African savanna elephant)
Length = 85
Score = 56.0 bits (28), Expect = 8e-08
Identities = 61/70 (87%), Gaps = 4/70 (5%)
Strand = Plus / Plus
Query: 10 cagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttga 69
|||| |||||||| |||| ||||||||||||| ||||| ||||||||||||||||||
Sbjct: 11 cagtagttcttcagtggcaagctttatgtcct--gaccca--gctaaagctgccagttga 66
Query: 70 agagctgttg 79
||| ||||||
Sbjct: 67 agaactgttg 76
>RF00653;mir-22;BAAF04035139.1/3478-3391 8090:Oryzias latipes
(Japanese medaka)
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 15 gttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagttgaagagc 74
||||||||||||| |||||||||| ||| | ||| |||||||||||||| |||||| |
Sbjct: 16 gttcttcactggcaagctttatgttctcgtgcacca-gctaaagctgccagctgaagaac 74
Query: 75 tgttgtg 81
|||||||
Sbjct: 75 tgttgtg 81
>RF00653;mir-22;CR353219.1/89-176 9031:Gallus gallus (chicken)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 52 gctaaagctgccagttgaagagctgttg 79
||||||||||||||||||||| ||||||
Sbjct: 52 gctaaagctgccagttgaagaactgttg 79
>RF00653;mir-22;CU442763.9/20980-21067 7955:Danio rerio
(zebrafish)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 50 acgctaaagctgccagttgaagagctgttgtg 81
|||||||||||||||| |||||| ||||||||
Sbjct: 50 acgctaaagctgccagctgaagaactgttgtg 81
