miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;AANH01005378.1/81475-81399 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 77

 Score =  127 bits (64), Expect = 2e-29
 Identities = 73/76 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  agctggagggattcctggcagagtgatttggctgtgatgtaatgtaaatcacattgccag 60
          ||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 2  agctggaaggattcctggcagagtgattttgttgtgatgtaatgtaaatcacattgccag 61

                          
Query: 61 ggatttccaaccagct 76
          ||||||||||||||||
Sbjct: 62 ggatttccaaccagct 77




>RF00642;mir-23;BAAE01159439.1/298-222 8090:Oryzias latipes
          (Japanese medaka)
          Length = 77

 Score =  125 bits (63), Expect = 8e-29
 Identities = 72/75 (96%)
 Strand = Plus / Plus

                                                                      
Query: 2  gctggagggattcctggcagagtgatttggctgtgatgtaatgtaaatcacattgccagg 61
          |||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 3  gctggagggattcctggcagagtgatttggttctgatgtcatgtaaatcacattgccagg 62

                         
Query: 62 gatttccaaccagct 76
          |||||||||||||||
Sbjct: 63 gatttccaaccagct 77




>RF00642;mir-23;BX664751.9/59056-58982 7955:Danio rerio
          (zebrafish)
          Length = 75

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 68/76 (89%), Gaps = 2/76 (2%)
 Strand = Plus / Plus

                                                                      
Query: 1  agctggagggattcctggcagagtgatttggctgtgatgtaatgtaaatcacattgccag 60
          |||||||||||||||||||||||||||||||   | || | ||  |||||||||||||||
Sbjct: 2  agctggagggattcctggcagagtgatttgg-gattatatcat-aaaatcacattgccag 59

                          
Query: 61 ggatttccaaccagct 76
          ||||||||||||||||
Sbjct: 60 ggatttccaaccagct 75




>RF00642;mir-23;ABRQ01065900.1/2548-2621 9813:Procavia capensis
          (cape rock hyrax)
          Length = 74

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 46 aaatcacattgccagggatttccaacc 72
          |||||||||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatttccaacc 70




>RF00642;mir-23;AAWZ01000886.1/16013-15939 28377:Anolis
          carolinensis (green anole)
          Length = 75

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 47 aatcacattgccagggatttccaacca 73
          |||||||||||||||||||||||||||
Sbjct: 46 aatcacattgccagggatttccaacca 72




>RF00642;mir-23;AAPN01322484.1/282-356 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 75

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 46 aaatcacattgccagggatttccaac 71
          ||||||||||||||||||||||||||
Sbjct: 45 aaatcacattgccagggatttccaac 70




>RF00642;mir-23;ABRO01400204.1/368-441 10020:Dipodomys ordii
          (Ord's kangaroo rat)
          Length = 74

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 46 aaatcacattgccagggatttccaac 71
          ||||||||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatttccaac 69




>RF00642;mir-23;BX908735.10/1674-1753 7955:Danio rerio (zebrafish)
          Length = 80

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                       
Query: 41 aatgtaaatcacattgccagggatttcca 69
          |||| ||||||||||||||||||||||||
Sbjct: 45 aatgaaaatcacattgccagggatttcca 73




>RF00642;mir-23;CAAB01001656.1/44110-44031 31033:Takifugu rubripes
          Length = 80

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 aaatcacattgccagggatttcca 69
          ||||||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatttcca 73




>RF00642;mir-23;ABPM01028978.1/952-875 106582:Maylandia zebra
          (zebra mbuna)
          Length = 78

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 aatcacattgccagggatttccaa 70
          ||||||||||||||||||||||||
Sbjct: 49 aatcacattgccagggatttccaa 72




>RF00642;mir-23;AANH01003598.1/90472-90550 69293:Gasterosteus
          aculeatus (three-spined stickleback)
          Length = 79

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 aaatcacattgccagggatttcca 69
          ||||||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatttcca 72




>RF00642;mir-23;BAAF04082680.1/5350-5271 8090:Oryzias latipes
          (Japanese medaka)
          Length = 80

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 46 aaatcacattgccagggatttcca 69
          ||||||||||||||||||||||||
Sbjct: 50 aaatcacattgccagggatttcca 73




>RF00642;mir-23;BAAE01102385.1/318-394 8090:Oryzias latipes
          (Japanese medaka)
          Length = 77

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 47 aatcacattgccagggatttccaa 70
          ||||||||||||||||||||||||
Sbjct: 48 aatcacattgccagggatttccaa 71




>RF00642;mir-23;AANN01357153.1/1425-1351 9365:Erinaceus europaeus
          (western European hedgehog)
          Length = 75

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 aaatcacattgccagggatttccaacc 72
          |||||||||||||||||||| ||||||
Sbjct: 45 aaatcacattgccagggattaccaacc 71




>RF00642;mir-23;AAPY01721327.1/893-821 37347:Tupaia belangeri
          (northern tree shrew)
          Length = 73

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 45 taaatcacattgccagggatttccaac 71
          |||||||||||||||| ||||||||||
Sbjct: 42 taaatcacattgccagagatttccaac 68




>RF00642;mir-23;AAVX01508943.1/286-212 7868:Callorhinchus milii
          (ghost shark)
          Length = 75

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 46 aaatcacattgccagggatttccaacc 72
          |||||||||||||||||||| ||||||
Sbjct: 45 aaatcacattgccagggattaccaacc 71




>RF00642;mir-23;AAPY01550614.1/2244-2174 37347:Tupaia belangeri
          (northern tree shrew)
          Length = 71

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 45 taaatcacattgccagggatt 65
          |||||||||||||||||||||
Sbjct: 40 taaatcacattgccagggatt 60