miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34559_fru-mir-23a-3:mirbase
Length = 80
Score = 137 bits (69), Expect = 1e-33
Identities = 79/81 (97%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 1 tctgttggccaggggaattcctggcagagtgatttttgagactacaggactgaatcacat 60
||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 tctgttggccagggggattcctggcagagtgattttt-agactacaggactgaatcacat 59
Query: 61 tgccagggatttccaatggct 81
|||||||||||||||||||||
Sbjct: 60 tgccagggatttccaatggct 80
>34225_dre-mir-23a-2:mirbase
Length = 98
Score = 101 bits (51), Expect = 7e-23
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 7 ggccaggggaattcctggcagagtgatttttgagactacaggactgaatcacattgccag 66
||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||
Sbjct: 11 ggccaggggaattcctggcagagtgatttttaaaccta-atgactgaatcacattgccag 69
Query: 67 ggatttccaatggct 81
|||||||||||||||
Sbjct: 70 ggatttccaatggct 84
>25714_xtr-mir-23a-2:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaat 77
|||||||||||||||||||||||||
Sbjct: 51 aatcacattgccagggatttccaat 75
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 17 attcctggcagagtgattt 35
|||||||||||||||||||
Sbjct: 15 attcctggcagagtgattt 33
>33926_ssc-mir-23a:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaat 77
|||||||||||||||||||||||||
Sbjct: 41 aatcacattgccagggatttccaat 65
>25659_xla-mir-23a:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 50 aatcacattgccagggatttccaa 73
>25713_xtr-mir-23a-1:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 50 aatcacattgccagggatttccaa 73
>26959_eca-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>27343_mdo-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 41 aatcacattgccagggatttccaa 64
>27490_age-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>27598_sla-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>27665_mml-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>28182_mne-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>28269_ggo-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>28374_hsa-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>30054_ppa-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>30161_ptr-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>30766_ppy-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>31403_lca-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>31440_oan-mir-23a:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 52 aatcacattgccagggatttccaa 75
>31789_mmu-mir-23a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 45 aatcacattgccagggatttccaa 68
>32673_rno-mir-23a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 45 aatcacattgccagggatttccaa 68
>33144_bta-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>34226_dre-mir-23a-3:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 47 aatcacattgccagggatttccaa 70
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 17 attcctggcagagtgattt 35
|||||||||||||||||||
Sbjct: 13 attcctggcagagtgattt 31
>34558_fru-mir-23a-2:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 47 aatcacattgccagggatttccaa 70
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 17 attcctggcagagtgattt 35
|||||||||||||||||||
Sbjct: 11 attcctggcagagtgattt 29
>34706_tni-mir-23a-2:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaa 76
||||||||||||||||||||||||
Sbjct: 47 aatcacattgccagggatttccaa 70
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 17 attcctggcagagtgattt 35
|||||||||||||||||||
Sbjct: 11 attcctggcagagtgattt 29
>34224_dre-mir-23a-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttcca 75
|||||||||||||||||||||||
Sbjct: 55 aatcacattgccagggatttcca 77
>34557_fru-mir-23a-1:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttcca 75
|||||||||||||||||||||||
Sbjct: 55 aatcacattgccagggatttcca 77
>34705_tni-mir-23a-1:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttcca 75
|||||||||||||||||||||||
Sbjct: 55 aatcacattgccagggatttcca 77
>25443_pma-mir-23b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatttccaatggc 80
||||||||||||||||||| ||| ||||
Sbjct: 53 aatcacattgccagggattaccactggc 80
>26637_cfa-mir-23a:mirbase
Length = 52
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggattt 72
||||||||||||||||||||
Sbjct: 33 aatcacattgccagggattt 52
>25442_pma-mir-23a:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 49 aatcacattgccagggatt 67
>25715_xtr-mir-23b:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 52 aatcacattgccagggatt 70
>25907_gga-mir-23b:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 51 aatcacattgccagggatt 69
>26412_tgu-mir-23:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 40 aatcacattgccagggatt 58
>26638_cfa-mir-23b:mirbase
Length = 54
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 35 aatcacattgccagggatt 53
>26960_eca-mir-23b:mirbase
Length = 74
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 45 aatcacattgccagggatt 63
>27344_mdo-mir-23b:mirbase
Length = 74
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 45 aatcacattgccagggatt 63
>27666_mml-mir-23b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 57 aatcacattgccagggatt 75
>28375_hsa-mir-23b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 57 aatcacattgccagggatt 75
>30055_ppa-mir-23b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 57 aatcacattgccagggatt 75
>30162_ptr-mir-23b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 57 aatcacattgccagggatt 75
>30767_ppy-mir-23b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 57 aatcacattgccagggatt 75
>31790_mmu-mir-23b:mirbase
Length = 74
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 45 aatcacattgccagggatt 63
>32674_rno-mir-23b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 57 aatcacattgccagggatt 75
>33145_bta-mir-23b:mirbase
Length = 60
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 37 aatcacattgccagggatt 55
>33146_bta-mir-23b:mirbase
Length = 60
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 37 aatcacattgccagggatt 55
>33927_ssc-mir-23b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 49 aatcacattgccagggatt 67
>34227_dre-mir-23b:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 50 aatcacattgccagggatt 68
>34560_fru-mir-23b:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 44 aatcacattgccagggatt 62
>34708_tni-mir-23b:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 53 aatcacattgccagggatt 71
|||||||||||||||||||
Sbjct: 44 aatcacattgccagggatt 62
