miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34560_fru-mir-23b:mirbase
Length = 73
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ggctgtgagggttcctggcgtgctgatttgtgacctatgataaaatcacattgccaggga 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 ggctgtgagggttcctggcgtgctgatttgtgacttatgataaaatcacattgccaggga 60
Query: 61 ttaccacac 69
|||||||||
Sbjct: 61 ttaccacac 69
>26960_eca-mir-23b:mirbase
Length = 74
Score = 79.8 bits (40), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 9 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 68
>27344_mdo-mir-23b:mirbase
Length = 74
Score = 79.8 bits (40), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 9 gggttcctggcatgctgatttgtgacttaagatgaaaatcacattgccagggattaccac 68
>27666_mml-mir-23b:mirbase
Length = 97
Score = 79.8 bits (40), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 21 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 80
>28375_hsa-mir-23b:mirbase
Length = 97
Score = 79.8 bits (40), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 21 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 80
>30055_ppa-mir-23b:mirbase
Length = 97
Score = 79.8 bits (40), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 21 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 80
>30162_ptr-mir-23b:mirbase
Length = 97
Score = 79.8 bits (40), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 21 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 80
>30767_ppy-mir-23b:mirbase
Length = 97
Score = 79.8 bits (40), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 21 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 80
>33145_bta-mir-23b:mirbase
Length = 60
Score = 79.8 bits (40), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 1 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 60
>33146_bta-mir-23b:mirbase
Length = 60
Score = 79.8 bits (40), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 1 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 60
>33927_ssc-mir-23b:mirbase
Length = 80
Score = 79.8 bits (40), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 13 gggttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggattaccac 72
>25715_xtr-mir-23b:mirbase
Length = 88
Score = 75.8 bits (38), Expect = 4e-15
Identities = 57/62 (91%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| ||||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 16 gggttcctggcatgctgatttgtgagttaagattaaaatcacattgccagggattaccac 75
Query: 68 ac 69
||
Sbjct: 76 ac 77
>26412_tgu-mir-23:mirbase
Length = 71
Score = 71.9 bits (36), Expect = 6e-14
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| || ||||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 4 gggttcctggcatgatgatttgtgacttaagattaaaatcacattgccagggattaccac 63
>31790_mmu-mir-23b:mirbase
Length = 74
Score = 71.9 bits (36), Expect = 6e-14
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 9 gggttcctggcatgctgatttgtgacttgagattaaaatcacattgccagggattaccac 68
>32674_rno-mir-23b:mirbase
Length = 97
Score = 71.9 bits (36), Expect = 6e-14
Identities = 55/60 (91%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||
Sbjct: 21 gggttcctggcatgctgatttgtgacttgagattaaaatcacattgccagggattaccac 80
>26638_cfa-mir-23b:mirbase
Length = 54
Score = 67.9 bits (34), Expect = 9e-13
Identities = 50/54 (92%), Gaps = 1/54 (1%)
Strand = Plus / Plus
Query: 11 gttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggatta 63
||||||||| |||||||||||||| || ||| ||||||||||||||||||||||
Sbjct: 1 gttcctggcatgctgatttgtgacttaagattaaaatcacattgccagggatta 54
>25907_gga-mir-23b:mirbase
Length = 86
Score = 65.9 bits (33), Expect = 4e-12
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| || |||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 15 gggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggattaccac 74
Query: 68 a 68
|
Sbjct: 75 a 75
>31441_oan-mir-23b:mirbase
Length = 109
Score = 63.9 bits (32), Expect = 1e-11
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatga-taaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || || |||||||||||||||||||| |||||
Sbjct: 26 gggttcctggcatgctgatttgtgacttaagagaaaaatcacattgccagggataaccac 85
>34227_dre-mir-23b:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggattaccacac 69
||||||||||||||||||||||||||||
Sbjct: 48 aaaatcacattgccagggattaccacac 75
>25443_pma-mir-23b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggattaccac 67
||||||||||||||||||||||||||
Sbjct: 51 aaaatcacattgccagggattaccac 76
>25442_pma-mir-23a:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggattacc 65
||||||||||||||||||||||||
Sbjct: 47 aaaatcacattgccagggattacc 70
>34226_dre-mir-23a-3:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ataaaatcacattgccagggatt 62
|||||||||||||||||||||||
Sbjct: 43 ataaaatcacattgccagggatt 65
>34224_dre-mir-23a-1:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggattaccac 67
||||||||||||||||||||| ||||
Sbjct: 53 aaaatcacattgccagggatttccac 78
>34557_fru-mir-23a-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggattaccac 67
||||||||||||||||||||| ||||
Sbjct: 53 aaaatcacattgccagggatttccac 78
>34705_tni-mir-23a-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggattaccac 67
||||||||||||||||||||| ||||
Sbjct: 53 aaaatcacattgccagggatttccac 78
>25714_xtr-mir-23a-2:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggatt 62
|||||||||||||||||||||
Sbjct: 49 aaaatcacattgccagggatt 69
>31440_oan-mir-23a:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggatt 62
|||||||||||||||||||||
Sbjct: 50 aaaatcacattgccagggatt 70
>25659_xla-mir-23a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatt 68
>25713_xtr-mir-23a-1:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatt 68
>26637_cfa-mir-23a:mirbase
Length = 52
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 32 aaatcacattgccagggatt 51
>26959_eca-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>27343_mdo-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 40 aaatcacattgccagggatt 59
>27490_age-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>27598_sla-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>27665_mml-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>28182_mne-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>28269_ggo-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>28374_hsa-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>30054_ppa-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>30161_ptr-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>30766_ppy-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>31403_lca-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>31789_mmu-mir-23a:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatt 63
>32673_rno-mir-23a:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatt 63
>33144_bta-mir-23a:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatt 62
>33926_ssc-mir-23a:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 40 aaatcacattgccagggatt 59
>34558_fru-mir-23a-2:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 46 aaatcacattgccagggatt 65
>34706_tni-mir-23a-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggatt 62
||||||||||||||||||||
Sbjct: 46 aaatcacattgccagggatt 65
>34225_dre-mir-23a-2:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 aatcacattgccagggatt 62
|||||||||||||||||||
Sbjct: 56 aatcacattgccagggatt 74
>34559_fru-mir-23a-3:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 aatcacattgccagggatt 62
|||||||||||||||||||
Sbjct: 52 aatcacattgccagggatt 70
>34707_tni-mir-23a-3:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 aatcacattgccagggatt 62
|||||||||||||||||||
Sbjct: 53 aatcacattgccagggatt 71
