miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00642;mir-23;BAAE01089507.1/636-563 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 129 bits (65), Expect = 5e-30
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 1 ggctgtgagggttcctggcgtgctgatttgtgacctatgataaaatcacattgccaggga 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2 ggctgtgagggttcctggcgtgctgatttgtgacttatgataaaatcacattgccaggga 61
Query: 61 ttaccacac 69
|||||||||
Sbjct: 62 ttaccacac 70
>RF00642;mir-23;AAVX01114775.1/823-749 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 75.8 bits (38), Expect = 7e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 3 ctgtgagggttcctggcgtgctgatttgtgacctatgataaaa-tcacattgccagggat 61
||||| ||||||||||| |||||||||||||| | ||||||| ||||||||||||||||
Sbjct: 4 ctgtgtgggttcctggcatgctgatttgtgacatgagataaaaatcacattgccagggat 63
Query: 62 taccac 67
||||||
Sbjct: 64 taccac 69
>RF00642;mir-23;AADN02067827.1/5868-5942 9031:Gallus gallus
(chicken)
Length = 75
Score = 65.9 bits (33), Expect = 6e-11
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgat-aaaatcacattgccagggattaccac 67
||||||||||| || |||||||||| || ||| ||||||||||||||||||||||||||
Sbjct: 10 gggttcctggcatgatgatttgtgagttaagattaaaatcacattgccagggattaccac 69
Query: 68 a 68
|
Sbjct: 70 a 70
>RF00642;mir-23;AAPN01152921.1/1403-1329 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 63.9 bits (32), Expect = 2e-10
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatga-taaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || || |||||||||||||||||||| |||||
Sbjct: 10 gggttcctggcatgctgatttgtgacttaagagaaaaatcacattgccagggataaccac 69
>RF00642;mir-23;AAPY01550614.1/2244-2174 37347:Tupaia belangeri
(northern tree shrew)
Length = 71
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/59 (93%), Gaps = 3/59 (5%)
Strand = Plus / Plus
Query: 9 gggttcctggcgtgctgatttgtgacctatgataaaatcacattgccagggattaccac 67
||||||||||| |||||||||||||| || |||||| ||||||||||||||||||||||
Sbjct: 10 gggttcctggcatgctgatttgtgac-ta-gataaa-tcacattgccagggattaccac 65
>RF00642;mir-23;CT027840.6/2697-2774 7955:Danio rerio (zebrafish)
Length = 78
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggattaccacac 69
||||||||||||||||||||||||||||
Sbjct: 47 aaaatcacattgccagggattaccacac 74
>RF00642;mir-23;AAVX01508943.1/286-212 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 41 taaaatcacattgccagggattacca 66
||||||||||||||||||||||||||
Sbjct: 43 taaaatcacattgccagggattacca 68
>RF00642;mir-23;AAYZ01075783.1/3205-3279 9978:Ochotona princeps
(American pika)
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 12 ttcctggcgtgctgatttgtgacctatgataaaatc-acattgccagggattaccac 67
|||||||| |||||||||||||| | ||| ||| | ||||||||||||||||||||
Sbjct: 13 ttcctggcatgctgatttgtgacttcagattaaaacgacattgccagggattaccac 69
>RF00642;mir-23;AANN01357153.1/1425-1351 9365:Erinaceus europaeus
(western European hedgehog)
Length = 75
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 aaatcacattgccagggattacca 66
||||||||||||||||||||||||
Sbjct: 45 aaatcacattgccagggattacca 68
>RF00642;mir-23;BX664751.9/59056-58982 7955:Danio rerio
(zebrafish)
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 ataaaatcacattgccagggatt 62
|||||||||||||||||||||||
Sbjct: 42 ataaaatcacattgccagggatt 64
>RF00642;mir-23;BX908735.10/1674-1753 7955:Danio rerio (zebrafish)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggattaccac 67
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggatttccac 74
>RF00642;mir-23;CAAB01001656.1/44110-44031 31033:Takifugu rubripes
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggattaccac 67
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggatttccac 74
>RF00642;mir-23;AANH01003598.1/90472-90550 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggattaccac 67
||||||||||||||||||||| ||||
Sbjct: 48 aaaatcacattgccagggatttccac 73
>RF00642;mir-23;BAAF04082680.1/5350-5271 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggattaccac 67
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggatttccac 74
>RF00642;mir-23;AAPN01322484.1/282-356 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 42 aaaatcacattgccagggatt 62
|||||||||||||||||||||
Sbjct: 44 aaaatcacattgccagggatt 64
