miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34565_fru-mir-26:mirbase
Length = 88
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 6 aggcctcggcctggttcaagtaatccaggataggctggttaaccctgcacggcctattct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggcctcggcctggttcaagtaatccaggataggctggttaaccctgcacggcctattct 60
Query: 66 tgattacttgtgtcaggaagtggccg 91
||||||||||||||||||||||||||
Sbjct: 61 tgattacttgtgtcaggaagtggccg 86
>25721_xtr-mir-26-1:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 1e-12
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 14 gcctggttcaagtaatccaggataggctggtt-aaccctgcacggcctattcttgattac 72
||||||||||||||||||||||||||||| || | |||||||||| ||||||||||
Sbjct: 8 gcctggttcaagtaatccaggataggctgtttcctcaaagcacggcctactcttgattac 67
Query: 73 ttgtgtcaggaagt 86
|||| |||||||||
Sbjct: 68 ttgtttcaggaagt 81
>34236_dre-mir-26b:mirbase
Length = 97
Score = 61.9 bits (31), Expect = 8e-11
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 14 gcctggttcaagtaatccaggataggctggttaaccct-gcacggcctattcttgattac 72
|||||||||||||||||||||||||| | ||| | || | |||||||||||||| ||||
Sbjct: 14 gcctggttcaagtaatccaggataggttagttcccactagtacggcctattcttggttac 73
Query: 73 ttgtgtcagga 83
|||| ||||||
Sbjct: 74 ttgtttcagga 84
>25446_pma-mir-26a-1:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 gcctggttcaagtaatccaggataggctgg 43
||||||||||||||||||||||||||||||
Sbjct: 8 gcctggttcaagtaatccaggataggctgg 37
>26414_tgu-mir-26-1:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||||||||||||||||||||||||||||
Sbjct: 4 ggcctggttcaagtaatccaggataggctg 33
>26415_tgu-mir-26-2:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||||||||||||||||||||||||||||
Sbjct: 4 ggcctggttcaagtaatccaggataggctg 33
>27350_mdo-mir-26-3:mirbase
Length = 70
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggataggctgg 43
|||||||||||||||||||||||||||||
Sbjct: 2 cctggttcaagtaatccaggataggctgg 30
>34233_dre-mir-26a-1:mirbase
Length = 78
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggct 41
|||||||||||||||||||||||||||||
Sbjct: 4 ggcctggttcaagtaatccaggataggct 32
>25909_gga-mir-26a:mirbase
Length = 77
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggataggctg 42
||||||||||||||||||||||||||||
Sbjct: 5 cctggttcaagtaatccaggataggctg 32
>34235_dre-mir-26a-3:mirbase
Length = 137
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggataggct 41
|||||||||||||||||||||||||||
Sbjct: 34 cctggttcaagtaatccaggataggct 60
>26965_eca-mir-26a-2:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 3 ggcctcgttcaagtaatccaggataggctg 32
>27551_lla-mir-26a:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 3 ggcctcgttcaagtaatccaggataggctg 32
>27670_mml-mir-26a-1:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 3 ggcctcgttcaagtaatccaggataggctg 32
>28186_mne-mir-26a:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 3 ggcctcgttcaagtaatccaggataggctg 32
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 ggcctattcttgattacttg 75
||||||||||||||||||||
Sbjct: 47 ggcctattcttgattacttg 66
>28272_ggo-mir-26a:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 3 ggcctcgttcaagtaatccaggataggctg 32
>28380_hsa-mir-26a-1:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 3 ggcctcgttcaagtaatccaggataggctg 32
>30059_ppa-mir-26a:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 3 ggcctcgttcaagtaatccaggataggctg 32
>30166_ptr-mir-26a-1:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 3 ggcctcgttcaagtaatccaggataggctg 32
>30771_ppy-mir-26a:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 3 ggcctcgttcaagtaatccaggataggctg 32
>31794_mmu-mir-26a-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 9 ggcctcgttcaagtaatccaggataggctg 38
>32678_rno-mir-26a:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 9 ggccttgttcaagtaatccaggataggctg 38
>33150_bta-mir-26a-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 9 ggcctcgttcaagtaatccaggataggctg 38
>33153_bta-mir-26c:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 82 ggcctcgttcaagtaatccaggataggctg 53
>25448_pma-mir-26b:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctggtt 45
|||||| |||||||||||||||||||| |||||
Sbjct: 9 ggcctgattcaagtaatccaggataggttggtt 41
>26643_cfa-mir-26a-2:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 3e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctggttaaccctgcacggcctattcttgattacttgt 76
||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 1 ttcaagtaatccaggataggctgtttccgtctgtgaggcctattcttgattacttgt 57
>26964_eca-mir-26a:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctggttaaccctgcacggcctattcttgattacttgt 76
||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccatctgtgaggcctattcttgattacttgt 70
>27671_mml-mir-26a-2:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctggttaaccctgcacggcctattcttgattacttgt 76
||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccatctgtgaggcctattcttgattacttgt 70
>28381_hsa-mir-26a-2:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctggttaaccctgcacggcctattcttgattacttgt 76
||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccatctgtgaggcctattcttgattacttgt 70
>30167_ptr-mir-26a-2:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctggttaaccctgcacggcctattcttgattacttgt 76
||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 13 ttcaagtaatccaggataggctgtttccatctgtgaggcctattcttgattacttgt 69
>30772_ppy-mir-26a-2:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctggttaaccctgcacggcctattcttgattacttgt 76
||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccatctgtgaggcctattcttgattacttgt 70
>31443_oan-mir-26:mirbase
Length = 81
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggataggctg 42
|||||||||||||||||||||||||
Sbjct: 12 ggttcaagtaatccaggataggctg 36
>33151_bta-mir-26a-2:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctggttaaccctgcacggcctattcttgattacttgt 76
||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccatctgtgaggcctattcttgattacttgt 70
>33930_ssc-mir-26a:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctggttaaccctgcacggcctattcttgattacttgt 76
||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggctgtttccatctgtgaggcctattcttgattacttgt 70
>25447_pma-mir-26a-2:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 gttcaagtaatccaggataggctg 42
||||||||||||||||||||||||
Sbjct: 18 gttcaagtaatccaggataggctg 41
>34234_dre-mir-26a-2:mirbase
Length = 128
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 gttcaagtaatccaggataggctg 42
||||||||||||||||||||||||
Sbjct: 36 gttcaagtaatccaggataggctg 59
>25722_xtr-mir-26-2:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctg 42
|||||||||||||||||||||||
Sbjct: 12 ttcaagtaatccaggataggctg 34
>26642_cfa-mir-26a-1:mirbase
Length = 61
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctg 42
|||||||||||||||||||||||
Sbjct: 1 ttcaagtaatccaggataggctg 23
>27348_mdo-mir-26-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctg 42
|||||||||||||||||||||||
Sbjct: 1 ttcaagtaatccaggataggctg 23
>27349_mdo-mir-26-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctg 42
|||||||||||||||||||||||
Sbjct: 5 ttcaagtaatccaggataggctg 27
>31795_mmu-mir-26a-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctg 42
|||||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggctg 36
