miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00244;mir-26;CAAB01005025.1/9613-9686 31033:Takifugu rubripes
Length = 74
Score = 147 bits (74), Expect = 3e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 12 cggcctggttcaagtaatccaggataggctggttaaccctgcacggcctattcttgatta 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggcctggttcaagtaatccaggataggctggttaaccctgcacggcctattcttgatta 60
Query: 72 cttgtgtcaggaag 85
||||||||||||||
Sbjct: 61 cttgtgtcaggaag 74
>RF00244;mir-26;BAAE01056802.1/2019-1945 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 111 bits (56), Expect = 2e-24
Identities = 69/72 (95%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 14 gcctggttcaagtaatccaggataggctggttaaccct-gcacggcctattcttgattac 72
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 3 gcctggttcaagtaatccaggataggctggttaacactggcacggcctattcttgattac 62
Query: 73 ttgtgtcaggaa 84
|||| |||||||
Sbjct: 63 ttgtttcaggaa 74
>RF00244;mir-26;AAWZ01020482.1/55030-55104 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 65.9 bits (33), Expect = 9e-11
Identities = 64/72 (88%), Gaps = 3/72 (4%)
Strand = Plus / Plus
Query: 14 gcctggttcaagtaatccaggataggctggtta--accctgcacggcctattcttgatta 71
|||||||||||||||||||||||||||| |||| | | | ||||||||||||||||||
Sbjct: 3 gcctggttcaagtaatccaggataggct-gttaccaggcagtacggcctattcttgatta 61
Query: 72 cttgtgtcagga 83
||||| ||||||
Sbjct: 62 cttgtttcagga 73
>RF00244;mir-26;BX957326.8/213855-213781 7955:Danio rerio
(zebrafish)
Length = 75
Score = 61.9 bits (31), Expect = 1e-09
Identities = 62/71 (87%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 14 gcctggttcaagtaatccaggataggctggttaaccct-gcacggcctattcttgattac 72
|||||||||||||||||||||||||| | ||| | || | |||||||||||||| ||||
Sbjct: 3 gcctggttcaagtaatccaggataggttagttcccactagtacggcctattcttggttac 62
Query: 73 ttgtgtcagga 83
|||| ||||||
Sbjct: 63 ttgtttcagga 73
>RF00244;mir-26;AAFR03066353.1/7590-7517 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggataggctgg 43
|||||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggctgg 32
>RF00244;mir-26;BX322540.5/61735-61662 7955:Danio rerio
(zebrafish)
Length = 74
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggct 41
|||||||||||||||||||||||||||||
Sbjct: 2 ggcctggttcaagtaatccaggataggct 30
>RF00244;mir-26;AAPN01398538.1/2438-2512 9258:Ornithorhynchus
anatinus (platypus)
Length = 75
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggataggctg 42
||||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggctg 31
>RF00244;mir-26;AADN02000236.1/60671-60744 9031:Gallus gallus
(chicken)
Length = 74
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggataggctg 42
||||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggctg 31
>RF00244;mir-26;AAVX01037532.1/3546-3619 7868:Callorhinchus milii
(ghost shark)
Length = 74
Score = 56.0 bits (28), Expect = 8e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggataggctg 42
||||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggctg 31
>RF00244;mir-26;AAFR03065617.1/19793-19721 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 73
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 12 cggcctggttcaagtaatccaggataggctg 42
||||| |||||||||||||||||||||||||
Sbjct: 1 cggccaggttcaagtaatccaggataggctg 31
>RF00244;mir-26;CR388015.14/128267-128194 7955:Danio rerio
(zebrafish)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggataggct 41
|||||||||||||||||||||||||||
Sbjct: 4 cctggttcaagtaatccaggataggct 30
>RF00244;mir-26;AANH01008588.1/20720-20793 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 16 ctggttcaagtaatccaggataggctg 42
|||||||||||||||||||||||||||
Sbjct: 5 ctggttcaagtaatccaggataggctg 31
>RF00244;mir-26;BAAF04005282.1/5752-5678 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggatagg 39
|||||||||||||||||||||||||||
Sbjct: 2 ggcctggttcaagtaatccaggatagg 28
>RF00244;mir-26;AAIY01565150.1/1351-1424 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 74
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggataggctg 42
||||| ||||||||||||||||||||||||
Sbjct: 2 ggcctcgttcaagtaatccaggataggctg 31
>RF00244;mir-26;AAPN01108773.1/2160-2090 9258:Ornithorhynchus
anatinus (platypus)
Length = 71
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggataggctg 42
|||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggctg 31
>RF00244;mir-26;AAGU02304058.1/2186-2113 9785:Loxodonta africana
(African savanna elephant)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctggttaaccctgcacggcctattcttgattacttgt 76
||||||||||||||||||||||| || ||| |||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctgtttccatctgtgaggcctattcttgattacttgt 65
>RF00244;mir-26;CAAE01014542.1/1090180-1090107 99883:Tetraodon
nigroviridis
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggataggctg 42
|||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggctg 31
>RF00244;mir-26;AAWZ01018052.1/16808-16735 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 15 cctggttcaagtaatccaggataggctg 42
|||| |||||||||||||||||||||||
Sbjct: 4 cctgcttcaagtaatccaggataggctg 31
>RF00244;mir-26;CAAE01014737.1/605161-605232 99883:Tetraodon
nigroviridis
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggataggct 41
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;AC098806.3/13416-13344 31033:Takifugu rubripes
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggataggct 41
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;AANH01007655.1/107291-107217 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctggttaa 47
|||||||||||||||||||||| |||||
Sbjct: 9 ttcaagtaatccaggataggcttgttaa 36
>RF00244;mir-26;AANH01005795.1/17049-17122 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggataggct 41
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;BAAF04021096.1/2358-2285 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 19 gttcaagtaatccaggataggctg 42
||||||||||||||||||||||||
Sbjct: 8 gttcaagtaatccaggataggctg 31
>RF00244;mir-26;BAAE01145746.1/1134-1208 8090:Oryzias latipes
(Japanese medaka)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 18 ggttcaagtaatccaggataggct 41
||||||||||||||||||||||||
Sbjct: 7 ggttcaagtaatccaggataggct 30
>RF00244;mir-26;AAFR03041753.1/18045-17975 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 71
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctg 42
|||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctg 31
>RF00244;mir-26;AAWZ01023535.1/24478-24552 28377:Anolis
carolinensis (green anole)
Length = 75
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttcaagtaatccaggataggctg 42
|||||||||||||||||||||||
Sbjct: 9 ttcaagtaatccaggataggctg 31
>RF00244;mir-26;CAAE01014553.1/1193335-1193409 99883:Tetraodon
nigroviridis
Length = 75
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ggcctggttcaagtaatccaggatagg 39
|||||| ||||||||||||||||||||
Sbjct: 2 ggcctgattcaagtaatccaggatagg 28
