miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34566_fru-mir-27b:mirbase
Length = 74
Score = 147 bits (74), Expect = 1e-36
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 1 aggcacagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggcacagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggct 60
Query: 61 aagttctgcacctg 74
||||||||||||||
Sbjct: 61 aagttctgcacctg 74
>25724_xtr-mir-27b:mirbase
Length = 96
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 18 cagagcttagctgattggtgaacagtgattgattccctctttgttcacagtggctaagtt 77
Query: 66 ctgcacctg 74
|||||||||
Sbjct: 78 ctgcacctg 86
>26416_tgu-mir-27:mirbase
Length = 91
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 18 cagagcttagctgattggtgaacagtgattgttttcctctttgttcacagtggctaagtt 77
Query: 66 ctgcacctg 74
|||||||||
Sbjct: 78 ctgcacctg 86
>25910_gga-mir-27b:mirbase
Length = 97
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 18 cagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggctaagtt 77
Query: 66 ctgcacctg 74
|||||||||
Sbjct: 78 ctgcacctg 86
>27674_mml-mir-27b:mirbase
Length = 97
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 18 cagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggctaagtt 77
Query: 66 ctgcacctg 74
|||||||||
Sbjct: 78 ctgcacctg 86
>28384_hsa-mir-27b:mirbase
Length = 97
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 18 cagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggctaagtt 77
Query: 66 ctgcacctg 74
|||||||||
Sbjct: 78 ctgcacctg 86
>30170_ptr-mir-27b:mirbase
Length = 96
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 17 cagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggctaagtt 76
Query: 66 ctgcacctg 74
|||||||||
Sbjct: 77 ctgcacctg 85
>30775_ppy-mir-27b:mirbase
Length = 97
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 18 cagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggctaagtt 77
Query: 66 ctgcacctg 74
|||||||||
Sbjct: 78 ctgcacctg 86
>32681_rno-mir-27b:mirbase
Length = 97
Score = 121 bits (61), Expect = 7e-29
Identities = 67/69 (97%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 18 cagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggctaagtt 77
Query: 66 ctgcacctg 74
|||||||||
Sbjct: 78 ctgcacctg 86
>31798_mmu-mir-27b:mirbase
Length = 73
Score = 119 bits (60), Expect = 3e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 6 cagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggctaagtt 65
Query: 66 ctgcacct 73
||||||||
Sbjct: 66 ctgcacct 73
>27352_mdo-mir-27b:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 18 cagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggctaagtt 77
Query: 66 ctgcacctg 74
|||||||||
Sbjct: 78 ctgcacctg 86
>33156_bta-mir-27b:mirbase
Length = 97
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 18 cagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagtt 77
Query: 66 ctgcacctg 74
|||||||||
Sbjct: 78 ctgcacctg 86
>33932_ssc-mir-27b:mirbase
Length = 80
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 9 cagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagtt 68
Query: 66 ctgcacctg 74
|||||||||
Sbjct: 69 ctgcacctg 77
>26967_eca-mir-27b:mirbase
Length = 73
Score = 111 bits (56), Expect = 7e-26
Identities = 65/68 (95%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct: 6 cagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagtt 65
Query: 66 ctgcacct 73
||||||||
Sbjct: 66 ctgcacct 73
>26646_cfa-mir-27b:mirbase
Length = 63
Score = 101 bits (51), Expect = 7e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 7 agagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagttc 66
||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct: 1 agagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagttc 60
Query: 67 tgc 69
|||
Sbjct: 61 tgc 63
>31445_oan-mir-27b:mirbase
Length = 117
Score = 95.6 bits (48), Expect = 4e-21
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 29 cagagcttagctgattggtgaacagtgattgctggactctttgttcacagtggctaagtt 88
Query: 66 ctgc 69
||||
Sbjct: 89 ctgc 92
>34238_dre-mir-27b:mirbase
Length = 91
Score = 93.7 bits (47), Expect = 2e-20
Identities = 61/65 (93%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 17 cagagcttagctgattggtgaacagtgattga---actctttgttcacagtggctaagtt 73
Query: 66 ctgca 70
|||||
Sbjct: 74 ctgca 78
>25450_pma-mir-27b:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttctgca 70
||||||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttctgca 70
>34240_dre-mir-27d:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 45 tttgttcacagtggctaagttctgcacc 72
||||||||||||||||||||||| ||||
Sbjct: 53 tttgttcacagtggctaagttcttcacc 80
>34715_tni-mir-27e:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 aggcacagagcttagctgattggtga 26
||||||||||||||||| ||||||||
Sbjct: 11 aggcacagagcttagctaattggtga 36
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 ttgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 57 ttgttcacagtggctaagttc 77
>25449_pma-mir-27a:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 ttgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 47 ttgttcacagtggctaagttc 67
>34568_fru-mir-27e:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 ttgttcacagtggctaagttc 66
|||||||||||||||||||||
Sbjct: 57 ttgttcacagtggctaagttc 77
>25723_xtr-mir-27a:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>25725_xtr-mir-27c-1:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>25726_xtr-mir-27c-2:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>26645_cfa-mir-27a:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 39 tgttcacagtggctaagttc 58
>26966_eca-mir-27a:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27351_mdo-mir-27a:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>27491_age-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27599_sla-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27673_mml-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28187_mne-mir-27a:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28273_ggo-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28383_hsa-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30060_ppa-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30169_ptr-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30774_ppy-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>31404_lca-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>31444_oan-mir-27a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 51 tgttcacagtggctaagttc 70
>31797_mmu-mir-27a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>32680_rno-mir-27a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>33154_bta-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>33155_bta-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>33931_ssc-mir-27a:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>34237_dre-mir-27a:mirbase
Length = 131
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 77 tgttcacagtggctaagttc 96
>34241_dre-mir-27e:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttc 66
||||||||||||||||||||
Sbjct: 63 tgttcacagtggctaagttc 82
>34239_dre-mir-27c:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttctgc 69
|||||||||||| ||||||||||
Sbjct: 54 tgttcacagtggttaagttctgc 76
>34567_fru-mir-27c:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttctgc 69
|||||||||||| ||||||||||
Sbjct: 52 tgttcacagtggttaagttctgc 74
>34714_tni-mir-27c:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 47 tgttcacagtggctaagttctgc 69
|||||||||||| ||||||||||
Sbjct: 50 tgttcacagtggttaagttctgc 72
