miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34567_fru-mir-27c:mirbase
Length = 78
Score = 109 bits (55), Expect = 3e-25
Identities = 73/78 (93%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 1 ggctgtgcggcggcaggacttaacccacatgtgaacagtga--gtgtgccgtgttcacag 58
||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct: 1 ggctgtgtggcggcaggacttaacccacatgtgagcagtgagtgtgtgccatgttcacag 60
Query: 59 tggttaagttctgccgcc 76
||||||||||||||||||
Sbjct: 61 tggttaagttctgccgcc 78
>34239_dre-mir-27c:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgccgcc 76
|||||||||||||||||||||||||||
Sbjct: 54 tgttcacagtggttaagttctgccgcc 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 caggacttaacccacatgtgaaca 37
||||||||||||||| ||||||||
Sbjct: 14 caggacttaacccacttgtgaaca 37
>25450_pma-mir-27b:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 49 gtgttcacagtggttaagttctgc 72
||||||||||||| ||||||||||
Sbjct: 46 gtgttcacagtggctaagttctgc 69
>25724_xtr-mir-27b:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 59 tgttcacagtggctaagttctgc 81
>25910_gga-mir-27b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 59 tgttcacagtggctaagttctgc 81
>26416_tgu-mir-27:mirbase
Length = 91
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 59 tgttcacagtggctaagttctgc 81
>26646_cfa-mir-27b:mirbase
Length = 63
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 41 tgttcacagtggctaagttctgc 63
>26967_eca-mir-27b:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 47 tgttcacagtggctaagttctgc 69
>27352_mdo-mir-27b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 59 tgttcacagtggctaagttctgc 81
>27674_mml-mir-27b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 59 tgttcacagtggctaagttctgc 81
>28384_hsa-mir-27b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 59 tgttcacagtggctaagttctgc 81
>30170_ptr-mir-27b:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 58 tgttcacagtggctaagttctgc 80
>30775_ppy-mir-27b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 59 tgttcacagtggctaagttctgc 81
>31445_oan-mir-27b:mirbase
Length = 117
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 70 tgttcacagtggctaagttctgc 92
>31798_mmu-mir-27b:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 47 tgttcacagtggctaagttctgc 69
>32681_rno-mir-27b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 59 tgttcacagtggctaagttctgc 81
>33156_bta-mir-27b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 59 tgttcacagtggctaagttctgc 81
>33932_ssc-mir-27b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 50 tgttcacagtggctaagttctgc 72
>34238_dre-mir-27b:mirbase
Length = 91
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 55 tgttcacagtggctaagttctgc 77
>34566_fru-mir-27b:mirbase
Length = 74
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 47 tgttcacagtggctaagttctgc 69
>34713_tni-mir-27b:mirbase
Length = 74
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgc 72
|||||||||||| ||||||||||
Sbjct: 47 tgttcacagtggctaagttctgc 69
