miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;CAAE01007645.1/64036-63959 99883:Tetraodon
nigroviridis
Length = 78
Score = 149 bits (75), Expect = 6e-36
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 2 gctgtgcggcggcaggacttaacccacatgtgaacagtgagtgtgccgtgttcacagtgg 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctgtgcggcggcaggacttaacccacatgtgaacagtgagtgtgccgtgttcacagtgg 60
Query: 62 ttaagttctgccgcc 76
|||||||||||||||
Sbjct: 61 ttaagttctgccgcc 75
>RF00644;mir-27;BAAE01102385.1/538-617 8090:Oryzias latipes
(Japanese medaka)
Length = 80
Score = 107 bits (54), Expect = 2e-23
Identities = 72/77 (93%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 2 gctgtgcggcggcaggacttaacccacatgtgaacagtgagtg--tgccgtgttcacagt 59
|||||||||| |||||||||| ||||||||||||||||||||| |||| ||||||||||
Sbjct: 1 gctgtgcggcagcaggacttagcccacatgtgaacagtgagtgtatgccatgttcacagt 60
Query: 60 ggttaagttctgccgcc 76
|||||||||||||||||
Sbjct: 61 ggttaagttctgccgcc 77
>RF00644;mir-27;CU138547.13/91679-91760 7955:Danio rerio
(zebrafish)
Length = 82
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 50 tgttcacagtggttaagttctgccgcc 76
|||||||||||||||||||||||||||
Sbjct: 53 tgttcacagtggttaagttctgccgcc 79
