miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00644;mir-27;BAAF04082680.1/4929-4846 8090:Oryzias latipes
(Japanese medaka)
Length = 84
Score = 139 bits (70), Expect = 6e-33
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 10 aaggcacagagcttagctaattggtgagcattgatccctgctatgtgttgttcacagtgg 69
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 7 aaggcacagagcttagctaattggtgagcattgatccctgctgtgtgttgttcacagtgg 66
Query: 70 ctaagttcagtgcc 83
||||||||||||||
Sbjct: 67 ctaagttcagtgcc 80
>RF00644;mir-27;CU855875.13/5510-5593 7955:Danio rerio (zebrafish)
Length = 84
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 16 cagagcttagctaattggtgagcattgatccct 48
||||||||||||||| |||||||||||||||||
Sbjct: 13 cagagcttagctaatcggtgagcattgatccct 45
>RF00644;mir-27;CAAB01004552.1/601-519 31033:Takifugu rubripes
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttgttcacagtggctaagttcagtg 81
|||||||||||||||||||||||||
Sbjct: 53 ttgttcacagtggctaagttcagtg 77
>RF00644;mir-27;AANH01005391.1/487407-487325 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 83
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttgttcacagtggctaagttcagtg 81
|||||||||||||||||||||||||
Sbjct: 53 ttgttcacagtggctaagttcagtg 77
>RF00644;mir-27;BAAF04073622.1/5313-5395 8090:Oryzias latipes
(Japanese medaka)
Length = 83
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ttgttcacagtggctaagttcagt 80
||||||||||||||||||||||||
Sbjct: 53 ttgttcacagtggctaagttcagt 76
