miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34570_fru-mir-29a-2:mirbase
Length = 126
Score = 133 bits (67), Expect = 3e-32
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 6 ctccaccaaaagatgactgatttcctctggtgcttagagccgcctgcagccttctagcac 65
|||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||||
Sbjct: 30 ctccaccaaaagatgactgatttcttctggtgctgagagtcggctgcagccttctagcac 89
Query: 66 catttgaaatcggttataaaactgtgg 92
|||||||||||||||||||||| ||||
Sbjct: 90 catttgaaatcggttataaaacagtgg 116
>34242_dre-mir-29a-1:mirbase
Length = 126
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 8 ccaccaaaagatgactgatttcctctggtgcttagagccgcctgcagccttctagcacca 67
|||||||| ||||||||||||||| |||||||||||| | || | | | ||||||||||
Sbjct: 30 ccaccaaacgatgactgatttcctttggtgcttagagtc-ccatctgtcatctagcacca 88
Query: 68 tttgaaatcggttataa 84
|||||||||||||||||
Sbjct: 89 tttgaaatcggttataa 105
>25727_xtr-mir-29a:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttataa 84
||||||||||||||||||||||||||||
Sbjct: 50 ttctagcaccatttgaaatcggttataa 77
>31446_oan-mir-29a-1:mirbase
Length = 118
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttataa 84
||||||||||||||||||||||||||||
Sbjct: 67 ttctagcaccatttgaaatcggttataa 94
>25729_xtr-mir-29c:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttataa 84
|||||||||||||||||||||||||||
Sbjct: 54 tctagcaccatttgaaatcggttataa 80
>25911_gga-mir-29a:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttata 83
|||||||||||||||||||||||||||
Sbjct: 52 ttctagcaccatttgaaatcggttata 78
>26417_tgu-mir-29a-1:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttata 83
|||||||||||||||||||||||||||
Sbjct: 38 ttctagcaccatttgaaatcggttata 64
>27354_mdo-mir-29a:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
||||||||||||||||||||||||||
Sbjct: 39 ttctagcaccatttgaaatcggttat 64
>25914_gga-mir-29c:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 53 tctagcaccatttgaaatcggttat 77
>26418_tgu-mir-29a-2:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 39 tctagcaccatttgaaatcggttat 63
>26973_eca-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>26974_eca-mir-29c-2:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>27679_mml-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>28390_hsa-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>30175_ptr-mir-29c:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>30780_ppy-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>31447_oan-mir-29a-2:mirbase
Length = 113
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 62 tctagcaccatttgaaatcggttat 86
>31805_mmu-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>32686_rno-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>33045_rno-mir-3556b:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 48 tctagcaccatttgaaatcggttat 24
>33161_bta-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>33937_ssc-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>34243_dre-mir-29a-2:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggtta 81
|||||||||||||||||||||||||
Sbjct: 42 ttctagcaccatttgaaatcggtta 66
>34569_fru-mir-29a-1:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggtta 81
|||||||||||||||||||||||||
Sbjct: 42 ttctagcaccatttgaaatcggtta 66
>34716_tni-mir-29a-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggtta 81
|||||||||||||||||||||||||
Sbjct: 42 ttctagcaccatttgaaatcggtta 66
>26652_cfa-mir-29c-2:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggtta 81
||||||||||||||||||||||||
Sbjct: 35 tctagcaccatttgaaatcggtta 58
>26651_cfa-mir-29c-1:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggtta 81
||||||||||||||||||||||||
Sbjct: 35 tctagcaccatttgaaatcggtta 58
>31802_mmu-mir-29a:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttataa 84
|||||||||||| |||||||||||||||
Sbjct: 51 ttctagcaccatctgaaatcggttataa 78
>32683_rno-mir-29a:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttataa 84
|||||||||||| |||||||||||||||
Sbjct: 51 ttctagcaccatctgaaatcggttataa 78
>33044_rno-mir-3556a:mirbase
Length = 118
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 57 ttctagcaccatttgaaatcggttataa 84
|||||||||||| |||||||||||||||
Sbjct: 50 ttctagcaccatctgaaatcggttataa 23
>33935_ssc-mir-29a:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttataa 84
|||||||||||| |||||||||||||||
Sbjct: 50 ttctagcaccatctgaaatcggttataa 77
>26970_eca-mir-29a:mirbase
Length = 65
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
|||||||||||| |||||||||||||
Sbjct: 40 ttctagcaccatctgaaatcggttat 65
>27493_age-mir-29a:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
|||||||||||| |||||||||||||
Sbjct: 39 ttctagcaccatctgaaatcggttat 64
>27553_lla-mir-29a:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
|||||||||||| |||||||||||||
Sbjct: 39 ttctagcaccatctgaaatcggttat 64
>27601_sla-mir-29a:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
|||||||||||| |||||||||||||
Sbjct: 39 ttctagcaccatctgaaatcggttat 64
>27676_mml-mir-29a:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
|||||||||||| |||||||||||||
Sbjct: 39 ttctagcaccatctgaaatcggttat 64
>28189_mne-mir-29a:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
|||||||||||| |||||||||||||
Sbjct: 39 ttctagcaccatctgaaatcggttat 64
>28275_ggo-mir-29a:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
|||||||||||| |||||||||||||
Sbjct: 39 ttctagcaccatctgaaatcggttat 64
>28387_hsa-mir-29a:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
|||||||||||| |||||||||||||
Sbjct: 39 ttctagcaccatctgaaatcggttat 64
>30062_ppa-mir-29a:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
|||||||||||| |||||||||||||
Sbjct: 39 ttctagcaccatctgaaatcggttat 64
>30172_ptr-mir-29a:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
|||||||||||| |||||||||||||
Sbjct: 39 ttctagcaccatctgaaatcggttat 64
>30777_ppy-mir-29a:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
|||||||||||| |||||||||||||
Sbjct: 39 ttctagcaccatctgaaatcggttat 64
>33158_bta-mir-29a:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
|||||||||||| |||||||||||||
Sbjct: 39 ttctagcaccatctgaaatcggttat 64
>25451_pma-mir-29a:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
||||||||||||||||||| |||||
Sbjct: 48 tctagcaccatttgaaatcagttat 72
>25452_pma-mir-29b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||| ||||||||||||
Sbjct: 48 tctagcaccattagaaatcggttat 72
>26648_cfa-mir-29a:mirbase
Length = 60
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggtta 81
|||||||||||| ||||||||||||
Sbjct: 36 ttctagcaccatctgaaatcggtta 60
>33162_bta-mir-29d:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||| ||||
Sbjct: 52 tctagcaccatttgaaatcgattat 76
>25453_pma-mir-29c:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatc 76
||||||||||||||||||||
Sbjct: 52 ttctagcaccatttgaaatc 71
