miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;BAAE01022609.1/1233-1169 8090:Oryzias latipes
(Japanese medaka)
Length = 65
Score = 99.6 bits (50), Expect = 7e-21
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 21 actgatttcctctggtgcttagagccgcctgcagccttctagcaccatttgaaatcggtt 80
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4 actgatttcctctggtgtttagagccttctgcagccttctagcaccatttgaaatcggtt 63
Query: 81 at 82
||
Sbjct: 64 at 65
>RF00074;mir-29;CAAB01003353.1/24980-24916 31033:Takifugu rubripes
Length = 65
Score = 97.6 bits (49), Expect = 3e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 18 atgactgatttcctctggtgcttagagccgcctgcagccttctagcaccatttgaaatcg 77
|||||||||||| ||||||||| |||| || |||||||||||||||||||||||||||||
Sbjct: 1 atgactgatttcttctggtgctgagagtcggctgcagccttctagcaccatttgaaatcg 60
Query: 78 gttat 82
|||||
Sbjct: 61 gttat 65
>RF00074;mir-29;BX323868.6/63999-64062 7955:Danio rerio
(zebrafish)
Length = 64
Score = 58.0 bits (29), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 18 atgactgatttcctctggtgcttagagccgcctgcagccttctagcaccatttgaaatcg 77
|||||||||||||| |||||||||||| | | | | | | ||||||||||||||||||||
Sbjct: 1 atgactgatttcctttggtgcttagagtcccat-ctgtcatctagcaccatttgaaatcg 59
Query: 78 gttat 82
|||||
Sbjct: 60 gttat 64
>RF00074;mir-29;AAWZ01025678.1/1955-1892 28377:Anolis carolinensis
(green anole)
Length = 64
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
||||||||||||||||||||||||||
Sbjct: 39 ttctagcaccatttgaaatcggttat 64
>RF00074;mir-29;AADN02039691.1/12626-12563 9031:Gallus gallus
(chicken)
Length = 64
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggttat 82
||||||||||||||||||||||||||
Sbjct: 39 ttctagcaccatttgaaatcggttat 64
>RF00074;mir-29;AADN02044957.1/857-794 9031:Gallus gallus
(chicken)
Length = 64
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64
>RF00074;mir-29;CAAE01015043.1/838981-839043 99883:Tetraodon
nigroviridis
Length = 63
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggtta 81
|||||||||||||||||||||||||
Sbjct: 38 ttctagcaccatttgaaatcggtta 62
>RF00074;mir-29;CAAB01004459.1/12691-12629 31033:Takifugu rubripes
Length = 63
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggtta 81
|||||||||||||||||||||||||
Sbjct: 38 ttctagcaccatttgaaatcggtta 62
>RF00074;mir-29;BAAF04011253.1/3876-3938 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggtta 81
|||||||||||||||||||||||||
Sbjct: 38 ttctagcaccatttgaaatcggtta 62
>RF00074;mir-29;AAVX01097121.1/1868-1805 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggtta 81
|||||||||||||||||||||||||
Sbjct: 39 ttctagcaccatttgaaatcggtta 63
>RF00074;mir-29;AAVX01087182.1/157-94 7868:Callorhinchus milii
(ghost shark)
Length = 64
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggttat 82
|||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64
>RF00074;mir-29;BAAF04011924.1/411-473 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggtta 81
||||||||||||||||||||||||
Sbjct: 39 tctagcaccatttgaaatcggtta 62
>RF00074;mir-29;AAVX01247987.1/1-62 7868:Callorhinchus milii
(ghost shark)
Length = 62
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggtt 80
||||||||||||||||||||||||
Sbjct: 39 ttctagcaccatttgaaatcggtt 62
>RF00074;mir-29;CR749762.6/80332-80264 7955:Danio rerio
(zebrafish)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 ttctagcaccatttgaaatcggt 79
|||||||||||||||||||||||
Sbjct: 42 ttctagcaccatttgaaatcggt 64
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggt 79
||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcggt 64
>RF00074;mir-29;AANH01007454.1/2347-2415 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggt 79
||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcggt 64
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 tctagcaccatttgaaatcggt 79
||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcggt 64