miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;CAAE01013715.1/7308-7378 99883:Tetraodon
nigroviridis
Length = 71
Score = 141 bits (71), Expect = 1e-33
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 4 cagaagctggtttcacgtggtggtttagatgtgtctcctcatcgtctagcaccatttgaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagaagctggtttcacgtggtggtttagatgtgtctcctcatcgtctagcaccatttgaa 60
Query: 64 atcagtgttct 74
|||||||||||
Sbjct: 61 atcagtgttct 71
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 83.8 bits (42), Expect = 3e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 5 agaagctggtttcacgtggtggtttagatgtgtctcctcatcgtctagcaccatttgaaa 64
|||||||||||||| |||||||||||||||||||| | ||||||||||||||||||
Sbjct: 2 agaagctggtttcatgtggtggtttagatgtgtctttctgttgtctagcaccatttgaaa 61
Query: 65 tcagtgttct 74
||||||||||
Sbjct: 62 tcagtgttct 71
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 73.8 bits (37), Expect = 3e-13
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 6 gaagctggtttcacgtggtggtttagatgtgtctcctcatcgtctagcaccatttgaaat 65
||||||||||||| ||||||||||||| | || |||| |||||||||||||||||||
Sbjct: 3 gaagctggtttcatatggtggtttagatttaactattcattgtctagcaccatttgaaat 62
Query: 66 cagtgttct 74
|||||||||
Sbjct: 63 cagtgttct 71
>RF00074;mir-29;BX465862.7/161280-161350 7955:Danio rerio
(zebrafish)
Length = 71
Score = 71.9 bits (36), Expect = 1e-12
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 4 cagaagctggtttcacgtggtggtttagatgtgt-ctcctcatcgtctagcaccatttga 62
|||| ||||||||||| ||||||||||||||||| || | || ||||||||||||||||
Sbjct: 1 cagatgctggtttcacatggtggtttagatgtgttctac-caaagtctagcaccatttga 59
Query: 63 aatcagtgttct 74
||||||||||||
Sbjct: 60 aatcagtgttct 71
>RF00074;mir-29;AAVX01119247.1/689-758 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 56.0 bits (28), Expect = 7e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 gtctagcaccatttgaaatcagtgttct 74
||||||||||||||||||||||||||||
Sbjct: 43 gtctagcaccatttgaaatcagtgttct 70
>RF00074;mir-29;AADN02044957.1/1768-1698 9031:Gallus gallus
(chicken)
Length = 71
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 tctagcaccatttgaaatcagtgttct 74
|||||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgttct 71
>RF00074;mir-29;BX001041.6/159008-158937 7955:Danio rerio
(zebrafish)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 tctagcaccatttgaaatcagtgttct 74
|||||||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtgttct 72
>RF00074;mir-29;BAAE01168881.1/2069-2001 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 tctagcaccatttgaaatcagtgttct 74
|||||||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcagtgttct 69
>RF00074;mir-29;AAVX01078214.1/596-525 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 tctagcaccatttgaaatcagtgttct 74
|||||||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtgttct 72
>RF00074;mir-29;CAAK05057292.1/12337-12269 7955:Danio rerio
(zebrafish)
Length = 69
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tctagcaccatttgaaatcagtgttc 73
||||||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcagtgttc 68
>RF00074;mir-29;AANN01104186.1/394-465 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 48 tctagcaccatttgaaatcagtgtt 72
|||||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtgtt 70
>RF00074;mir-29;CAAB01004459.1/12967-12899 31033:Takifugu rubripes
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tctagcaccatttgaaatcagtgttct 74
||||||||||||||||||| |||||||
Sbjct: 43 tctagcaccatttgaaatcggtgttct 69
>RF00074;mir-29;BAAF04011924.1/258-326 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 48 tctagcaccatttgaaatcagtgttct 74
||||||||||||||||||| |||||||
Sbjct: 43 tctagcaccatttgaaatcggtgttct 69
>RF00074;mir-29;AANH01001435.1/148652-148722 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 71
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 48 tctagcaccatttgaaatcagtgttc 73
||||||||||| ||||||||||||||
Sbjct: 45 tctagcaccatatgaaatcagtgttc 70
