miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34573_fru-mir-30b:mirbase
Length = 90
Score = 139 bits (70), Expect = 3e-34
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 4 tggtgtaaacatcctacactcagctgtgatcttttgccgcagaggctgagagaaggttgt 63
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 13 tggtgtaaacatcctacactcagctgtgatcctttgcggcagaggctgagagaaggttgt 72
Query: 64 ttacttgaactggctgga 81
||||||||||||||||||
Sbjct: 73 ttacttgaactggctgga 90
>31451_oan-mir-30b:mirbase
Length = 111
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgtga 32
||||||||||||||||||||||||||
Sbjct: 29 tgtaaacatcctacactcagctgtga 54
>34248_dre-mir-30b:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgtga 32
||||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactcagctgtga 41
>33940_ssc-mir-30b:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactcagctgt 30
|||||||||||||||||||||||||
Sbjct: 10 gtgtaaacatcctacactcagctgt 34
>33941_ssc-mir-30b:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactcagctgt 30
|||||||||||||||||||||||||
Sbjct: 10 gtgtaaacatcctacactcagctgt 34
>26654_cfa-mir-30b:mirbase
Length = 60
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgt 24
>26975_eca-mir-30b:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactcagctgt 24
>27495_age-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactcagctgt 40
>27555_lla-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactcagctgt 40
>27682_mml-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactcagctgt 40
>28191_mne-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactcagctgt 40
>28280_ggo-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactcagctgt 40
>28392_hsa-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactcagctgt 40
>30067_ppa-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactcagctgt 40
>30178_ptr-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactcagctgt 40
>30783_ppy-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactcagctgt 40
>31807_mmu-mir-30b:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 21 tgtaaacatcctacactcagctgt 44
>32688_rno-mir-30b:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactcagctgt 39
>32689_rno-mir-30b:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactcagctgt 39
>33165_bta-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactcagctgt 40
>33166_bta-mir-30b:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagctgt 30
||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactcagctgt 40
>25733_xtr-mir-30b:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagct 28
||||||||||||||||||||||
Sbjct: 12 tgtaaacatcctacactcagct 33
>25917_gga-mir-30b:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactcagct 28
||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactcagct 37
>25918_gga-mir-30c-1:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>26976_eca-mir-30c:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>27683_mml-mir-30c-1:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>28393_hsa-mir-30c-1:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>30179_ptr-mir-30c-1:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 15 gtgtaaacatcctacactc 33
>30784_ppy-mir-30c-1:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>31808_mmu-mir-30c-1:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>32690_rno-mir-30c-1:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactc 34
>33167_bta-mir-30c:mirbase
Length = 105
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 25 gtgtaaacatcctacactc 43
>33942_ssc-mir-30c-1:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 9 gtgtaaacatcctacactc 27
>34249_dre-mir-30c:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 10 gtgtaaacatcctacactc 28
>34574_fru-mir-30c:mirbase
Length = 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 8 gtgtaaacatcctacactc 26
>34721_tni-mir-30c:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 gtgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 9 gtgtaaacatcctacactc 27
