miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34575_fru-mir-30d:mirbase
Length = 98
Score = 155 bits (78), Expect = 6e-39
Identities = 84/86 (97%)
Strand = Plus / Plus
Query: 1 tggcagtttgaggctgtaaacatccccgactggaagctgtcactcagcagagctttcagt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 7 tggcagtttgaggctgtaaacatccccgactggaagctgtcactcagaagagctttcagt 66
Query: 61 ctgatgtttaccccctccgaccgcct 86
|||||||||||| |||||||||||||
Sbjct: 67 ctgatgtttaccacctccgaccgcct 92
>26657_cfa-mir-30d:mirbase
Length = 60
Score = 61.9 bits (31), Expect = 7e-11
Identities = 49/55 (89%)
Strand = Plus / Plus
Query: 15 tgtaaacatccccgactggaagctgtcactcagcagagctttcagtctgatgttt 69
||||||||||||||||||||||||| | ||||| ||||||||||| |||||||
Sbjct: 1 tgtaaacatccccgactggaagctggaagacagcaaagctttcagtcagatgttt 55
>33168_bta-mir-30d:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 3e-10
Identities = 51/57 (89%), Gaps = 2/57 (3%)
Strand = Plus / Plus
Query: 15 tgtaaacatccccgactggaagctgt--cactcagcagagctttcagtctgatgttt 69
|||||||||||||||||||||||||| ||| |||| ||||||||||| |||||||
Sbjct: 6 tgtaaacatccccgactggaagctgtaccacacagctaagctttcagtcagatgttt 62
>31453_oan-mir-30d:mirbase
Length = 132
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 12 ggctgtaaacatccccgactggaagctgt 40
|||||||||||||||||||||||||||||
Sbjct: 26 ggctgtaaacatccccgactggaagctgt 54
>25736_xtr-mir-30d:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 gctgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||||
Sbjct: 9 gctgtaaacatccccgactggaagctgt 36
>25920_gga-mir-30d:mirbase
Length = 64
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 gctgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||||
Sbjct: 4 gctgtaaacatccccgactggaagctgt 31
>26427_tgu-mir-30d:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 gctgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||||
Sbjct: 1 gctgtaaacatccccgactggaagctgt 28
>26428_tgu-mir-30d:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 gctgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||||
Sbjct: 1 gctgtaaacatccccgactggaagctgt 28
>31810_mmu-mir-30d:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||||||||||||||||||
Sbjct: 11 ctgtaaacatccccgactggaagctgt 37
>32692_rno-mir-30d:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||||||||||||||||||
Sbjct: 11 ctgtaaacatccccgactggaagctgt 37
>34250_dre-mir-30d:mirbase
Length = 128
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||||||||||||||||||
Sbjct: 34 ctgtaaacatccccgactggaagctgt 60
>26978_eca-mir-30d:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatccccgactggaagctgt 32
>27685_mml-mir-30d:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||
Sbjct: 5 tgtaaacatccccgactggaagctgt 30
>28193_mne-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>28281_ggo-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>28395_hsa-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>30068_ppa-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>30181_ptr-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>30785_ppy-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>33944_ssc-mir-30d:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 tgtaaacatccccgactggaagctgt 40
||||||||||||||||||||||||||
Sbjct: 8 tgtaaacatccccgactggaagctgt 33
>27356_mdo-mir-30a:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 ggctgtaaacatccccgactggaagctgt 40
|||||||||||||| ||||||||||||||
Sbjct: 3 ggctgtaaacatcctcgactggaagctgt 31
>33938_ssc-mir-30a:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 ggctgtaaacatccccgactggaagctgt 40
|||||||||||||| ||||||||||||||
Sbjct: 18 ggctgtaaacatcctcgactggaagctgt 46
>33939_ssc-mir-30a:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 12 ggctgtaaacatccccgactggaagctgt 40
|||||||||||||| ||||||||||||||
Sbjct: 18 ggctgtaaacatcctcgactggaagctgt 46
>25456_pma-mir-30b:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 gctgtaaacatccccgactggaagctg 39
|||||||||||||| ||||||||||||
Sbjct: 15 gctgtaaacatccctgactggaagctg 41
>25458_pma-mir-30d:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 gctgtaaacatccccgactggaagctg 39
||||||||||||| |||||||||||||
Sbjct: 10 gctgtaaacatccacgactggaagctg 36
>25731_xtr-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>25732_xtr-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>25915_gga-mir-30a:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>25916_gga-mir-30a:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>26423_tgu-mir-30b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 10 ctgtaaacatcctcgactggaagctgt 36
>26424_tgu-mir-30b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 10 ctgtaaacatcctcgactggaagctgt 36
>27680_mml-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>27681_mml-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>28278_ggo-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>28279_ggo-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>28391_hsa-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>30066_ppa-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>30065_ppa-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>30176_ptr-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>30177_ptr-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>30781_ppy-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>30782_ppy-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>31450_oan-mir-30a:mirbase
Length = 137
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 30 ctgtaaacatcctcgactggaagctgt 56
>31806_mmu-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>32687_rno-mir-30a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgt 31
>33164_bta-mir-30a:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| ||||||||||||||
Sbjct: 1 ctgtaaacatcctcgactggaagctgt 27
>26653_cfa-mir-30a:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 tgtaaacatccccgactggaagctgt 40
||||||||||| ||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgt 26
>25455_pma-mir-30a:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagc 37
|||||||||||| |||||||||||
Sbjct: 8 ctgtaaacatcctcgactggaagc 31
>25921_gga-mir-30e:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 13 gctgtaaacatccccgactggaagctgt 40
||||||||||||| |||||||||||||
Sbjct: 17 gctgtaaacatccttgactggaagctgt 44
>25457_pma-mir-30c:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| |||||| |||||||
Sbjct: 12 ctgtaaacatcctcgactgaaagctgt 38
>25737_xtr-mir-30e:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgt 42
>26979_eca-mir-30e:mirbase
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgt 42
>27686_mml-mir-30e:mirbase
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgt 42
>28396_hsa-mir-30e:mirbase
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgt 42
>30182_ptr-mir-30e:mirbase
Length = 91
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| |||||||||||||
Sbjct: 15 ctgtaaacatccttgactggaagctgt 41
>30786_ppy-mir-30e:mirbase
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgt 42
>31811_mmu-mir-30e:mirbase
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgt 42
>32693_rno-mir-30e:mirbase
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgt 42
>33169_bta-mir-30e:mirbase
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgt 42
>33945_ssc-mir-30e:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| |||||||||||||
Sbjct: 8 ctgtaaacatccttgactggaagctgt 34
>33946_ssc-mir-30e:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 14 ctgtaaacatccccgactggaagctgt 40
|||||||||||| |||||||||||||
Sbjct: 8 ctgtaaacatccttgactggaagctgt 34
>34247_dre-mir-30a:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 51 agctttcagtctgatgttt 69
|||||||||||||||||||
Sbjct: 55 agctttcagtctgatgttt 73
