miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34590_fru-mir-126:mirbase
Length = 63
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 1 cggcccattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cggcccattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataa 60
Query: 61 tgc 63
|||
Sbjct: 61 tgc 63
>34284_dre-mir-126b:mirbase
Length = 103
Score = 107 bits (54), Expect = 9e-25
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaata 59
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaata 76
>25944_gga-mir-126:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 3e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 1 cggcccattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataa 60
|||||||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct: 9 cggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataa 68
Query: 61 tgc 63
|||
Sbjct: 69 tgc 71
>26455_tgu-mir-126:mirbase
Length = 132
Score = 85.7 bits (43), Expect = 3e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 1 cggcccattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataa 60
|||||||||||||||||||||||||||| || |||| |||||||||||||||||||||
Sbjct: 59 cggcccattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataa 118
Query: 61 tgc 63
|||
Sbjct: 119 tgc 121
>34283_dre-mir-126a:mirbase
Length = 101
Score = 79.8 bits (40), Expect = 2e-16
Identities = 56/60 (93%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 5 ccattattacttttggtacgcgctatgccactctc-aactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 25 ccattattacttttggtacgcgctaggccagactcaaactcgtaccgtgagtaataatgc 84
>26692_cfa-mir-126:mirbase
Length = 59
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 1 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 58
>27013_eca-mir-126:mirbase
Length = 73
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
>27014_eca-mir-126:mirbase
Length = 73
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
>27721_mml-mir-126:mirbase
Length = 85
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 15 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 72
>28434_hsa-mir-126:mirbase
Length = 85
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 15 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 72
>30212_ptr-mir-126:mirbase
Length = 84
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 14 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 71
>30821_ppy-mir-126:mirbase
Length = 81
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 15 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 72
>31847_mmu-mir-126:mirbase
Length = 73
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
>31848_mmu-mir-126:mirbase
Length = 73
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
>32725_rno-mir-126:mirbase
Length = 73
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
>33060_rno-mir-3567:mirbase
Length = 118
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 86 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 29
>33204_bta-mir-126:mirbase
Length = 73
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
>33973_ssc-mir-126:mirbase
Length = 73
Score = 75.8 bits (38), Expect = 3e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 9 cattattacttttggtacgcgctgtgacacttcaaactcgtaccgtgagtaataatgc 66
>31481_oan-mir-126:mirbase
Length = 110
Score = 73.8 bits (37), Expect = 1e-14
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 3 gcccattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatg 62
|||||||||||||||||||||||||| || | || |||||||||||||||||||||||
Sbjct: 26 gcccattattacttttggtacgcgctgtgacgcttcaaactcgtaccgtgagtaataatg 85
Query: 63 c 63
|
Sbjct: 86 c 86
>25767_xtr-mir-126:mirbase
Length = 69
Score = 67.9 bits (34), Expect = 7e-13
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 8 cattattacttttggtacgcgctgtgtcacatcaaactcgtaccgtgagtaataatgc 65
>27377_mdo-mir-126:mirbase
Length = 69
Score = 67.9 bits (34), Expect = 7e-13
Identities = 52/58 (89%)
Strand = Plus / Plus
Query: 6 cattattacttttggtacgcgctatgccactctcaactcgtaccgtgagtaataatgc 63
||||||||||||||||||||||| || ||| ||||||||||||||||||||||||
Sbjct: 5 cattattacttttggtacgcgctgtgacacatcaaactcgtaccgtgagtaataatgc 62
>24832_cin-mir-126:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 ctcgtaccgtgagtaataa 60
|||||||||||||||||||
Sbjct: 49 ctcgtaccgtgagtaataa 67
>25326_csa-mir-126:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 ctcgtaccgtgagtaataa 60
|||||||||||||||||||
Sbjct: 65 ctcgtaccgtgagtaataa 83
>25475_pma-mir-126:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 ctcgtaccgtgagtaataa 60
|||||||||||||||||||
Sbjct: 44 ctcgtaccgtgagtaataa 62
