miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AARH01003539.1/168033-168162 3694:Populus
trichocarpa
Length = 130
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagccataaa 159
|||||||||||||||||||||||||||||||||
Sbjct: 98 tgagaatcttgatgatgctgcatcagccataaa 130
>RF00452;mir-172;AARH01004415.1/120029-119901 3694:Populus
trichocarpa
Length = 129
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagccataaa 159
|||||||||||||||||||||||||||||||||
Sbjct: 97 tgagaatcttgatgatgctgcatcagccataaa 129
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 tttgcggatgtagcatcatcaagattcacatgcaa 57
||||||| |||||||||||||||||||||||||||
Sbjct: 4 tttgcgggtgtagcatcatcaagattcacatgcaa 38
Score = 60.0 bits (30), Expect = 1e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 118 ttttggaactgagaatcttgatgatgctgcatcagccataaa 159
||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 118 ttttgaaagtgagaatcttgatgatgctgcatcagcaataaa 159
>RF00452;mir-172;AASG02049897.1/697-856 3988:Ricinus communis
(castor bean)
Length = 160
Score = 61.9 bits (31), Expect = 3e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagccata 157
|||||||||||||||||||||||||||||||
Sbjct: 128 tgagaatcttgatgatgctgcatcagccata 158
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 61.9 bits (31), Expect = 3e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 23 tttgcggatgtagcatcatcaagattcacatgcaa 57
|||||| ||||||||||||||||||||||||||||
Sbjct: 4 tttgcgcatgtagcatcatcaagattcacatgcaa 38
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagccataaa 159
|||||||||||||||||||||||| || |||||
Sbjct: 80 tgagaatcttgatgatgctgcatcggcaataaa 112
>RF00452;mir-172;ABIM01030483.1/4658-4870 3649:Carica papaya
(papaya)
Length = 213
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 20 ttatttgcggatgtagcatcatcaagattcacatgcaa 57
||||||| || |||||||||||||||||||||||||||
Sbjct: 1 ttatttgtgggtgtagcatcatcaagattcacatgcaa 38
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatc 150
||||||||||||||||||||||||
Sbjct: 181 tgagaatcttgatgatgctgcatc 204
>RF00452;mir-172;ABIM01012229.1/3274-3102 3649:Carica papaya
(papaya)
Length = 173
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagccataaa 159
|||||||||||||||||||||||| ||||||||
Sbjct: 141 tgagaatcttgatgatgctgcatcggccataaa 173
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 119 tttggaactgagaatcttgatgatgctgcatcagccataaa 159
||||||| |||||||||||||||||||||||| || |||||
Sbjct: 101 tttggaagtgagaatcttgatgatgctgcatcggcaataaa 141
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 23 tttgcggatgtagcatcatcaagattcacatgcaa 57
||||||| || ||||||||||||||||||||||||
Sbjct: 4 tttgcgggtggagcatcatcaagattcacatgcaa 38
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 58.0 bits (29), Expect = 4e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 119 tttggaactgagaatcttgatgatgctgcatcagccataaa 159
||||||| |||||||||||||||||||||||| || |||||
Sbjct: 122 tttggaagtgagaatcttgatgatgctgcatcggcaataaa 162
>RF00452;mir-172;BABK01107385.1/174-85 34305:Lotus japonicus
Length = 90
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagccataaa 159
||||||||||||||||||||||||||| |||||
Sbjct: 58 tgagaatcttgatgatgctgcatcagcaataaa 90
>RF00452;mir-172;AASG02019478.1/457-599 3988:Ricinus communis
(castor bean)
Length = 143
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagc 153
|||||||||||||||||||||||||||
Sbjct: 111 tgagaatcttgatgatgctgcatcagc 137
>RF00452;mir-172;BABK01027900.1/1116-1276 34305:Lotus japonicus
Length = 161
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 23 tttgcggatgtagcatcatcaagattcacatgcaa 57
||||| ||||||||| |||||||||||||||||||
Sbjct: 4 tttgctgatgtagcaccatcaagattcacatgcaa 38
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagccataaa 159
||||||||||||||||||||||| ||||||||
Sbjct: 129 tgagaatcttgatgatgctgcattggccataaa 161
>RF00452;mir-172;BABK01039752.1/451-284 34305:Lotus japonicus
Length = 168
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagc 153
|||||||||||||||||||||||||||
Sbjct: 136 tgagaatcttgatgatgctgcatcagc 162
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 31 tgtagcatcatcaagattcacatgcaa 57
|||||||||||||||||||||||||||
Sbjct: 12 tgtagcatcatcaagattcacatgcaa 38
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatc 150
||||||||||||||||||||||||
Sbjct: 89 tgagaatcttgatgatgctgcatc 112
>RF00452;mir-172;EU945504.1/992-1139 4577:Zea mays
Length = 148
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagc 153
|||||||||||||||||||||||||||
Sbjct: 116 tgagaatcttgatgatgctgcatcagc 142
>RF00452;mir-172;ABXC01002997.1/14893-14755 4558:Sorghum bicolor
(sorghum)
Length = 139
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagc 153
|||||||||||||||||||||||||||
Sbjct: 107 tgagaatcttgatgatgctgcatcagc 133
>RF00452;mir-172;ABXC01006306.1/12162-12041 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagc 153
|||||||||||||||||||||||||||
Sbjct: 90 tgagaatcttgatgatgctgcatcagc 116
>RF00452;mir-172;EU869069.1/352-463 39946:Oryza sativa Indica Group
Length = 112
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagc 153
|||||||||||||||||||||||||||
Sbjct: 80 tgagaatcttgatgatgctgcatcagc 106
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya
(papaya)
Length = 201
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 23 tttgcggatgtagcatcatcaagattcaca 52
|||||||||| |||||||||||||||||||
Sbjct: 4 tttgcggatggagcatcatcaagattcaca 33
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 23 tttgcggatgtagcatcatcaagattcaca 52
|||||||||| |||||||||||||||||||
Sbjct: 4 tttgcggatggagcatcatcaagattcaca 33
>RF00452;mir-172;AC189388.2/19492-19378 51351:Brassica rapa subsp.
pekinensis
Length = 115
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatca 151
|||||||||||||||||||||||||
Sbjct: 83 tgagaatcttgatgatgctgcatca 107
>RF00452;mir-172;FM163882.1/53-161 3702:Arabidopsis thaliana (thale
cress)
Length = 109
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatca 151
|||||||||||||||||||||||||
Sbjct: 77 tgagaatcttgatgatgctgcatca 101
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 31 tgtagcatcatcaagattcacatgc 55
|||||||||||||||||||||||||
Sbjct: 12 tgtagcatcatcaagattcacatgc 36
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatc 150
||||||||||||||||||||||||
Sbjct: 88 tgagaatcttgatgatgctgcatc 111
>RF00452;mir-172;ABXC01001026.1/165015-165125 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatcagcca 155
|||||||||||||||||||||||| ||||
Sbjct: 79 tgagaatcttgatgatgctgcatccgcca 107
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 26 gcggatgtagcatcatcaagattcacatgca 56
||||||| |||||||||||||||| ||||||
Sbjct: 105 gcggatgcagcatcatcaagattctcatgca 75
>RF00452;mir-172;AP006162.2/95640-95748 39947:Oryza sativa Japonica
Group
Length = 109
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 126 ctgagaatcttgatgatgctgcatc 150
|||||||||||||||||||||||||
Sbjct: 76 ctgagaatcttgatgatgctgcatc 100
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 130 gaatcttgatgatgctgcatcagc 153
||||||||||||||||||||||||
Sbjct: 68 gaatcttgatgatgctgcatcagc 91
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcatc 150
||||||||||||||||||||||||
Sbjct: 84 tgagaatcttgatgatgctgcatc 107
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 130 gaatcttgatgatgctgcatcagc 153
||||||||||||||||||||||||
Sbjct: 96 gaatcttgatgatgctgcatcagc 119
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 130 gaatcttgatgatgctgcatcagc 153
||||||||||||||||||||||||
Sbjct: 106 gaatcttgatgatgctgcatcagc 129
>RF00452;mir-172;CAAP02002084.1/47016-46906 29760:Vitis vinifera
Length = 111
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 130 gaatcttgatgatgctgcatcagc 153
||||||||||||||||||||||||
Sbjct: 30 gaatcttgatgatgctgcatcagc 7
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgcat 149
|||||||||||||||||||||||
Sbjct: 79 tgagaatcttgatgatgctgcat 101
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgca 148
||||||||||||||||||||||
Sbjct: 81 tgagaatcttgatgatgctgca 102
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgca 148
||||||||||||||||||||||
Sbjct: 91 tgagaatcttgatgatgctgca 112
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 23 tttgcggatgtagcatcatcaagattcaca 52
||||| |||| |||||||||||||||||||
Sbjct: 4 tttgctgatggagcatcatcaagattcaca 33
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 127 tgagaatcttgatgatgctgca 148
||||||||||||||||||||||
Sbjct: 100 tgagaatcttgatgatgctgca 121
