miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34311_dre-mir-142a:mirbase
Length = 91
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 gtacagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtg 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 2 gtacagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtg 61
Query: 61 tttcctactttatggatgagtgtactgttg 90
||||||||||||||||||||||||||||||
Sbjct: 62 tttcctactttatggatgagtgtactgttg 91
>34312_dre-mir-142a:mirbase
Length = 91
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 gtacagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtg 60
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 2 gtacagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtg 61
Query: 61 tttcctactttatggatgagtgtactgttg 90
||||||||||||||||||||||||||||||
Sbjct: 62 tttcctactttatggatgagtgtactgttg 91
>34603_fru-mir-142a:mirbase
Length = 86
Score = 163 bits (82), Expect = 3e-41
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>34604_fru-mir-142b:mirbase
Length = 86
Score = 123 bits (62), Expect = 2e-29
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaactattctacacagtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
|||||||||||||||||||| |||||
Sbjct: 61 tcctactttatggatgagtgcactgt 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 3 acagtgcagtcatccataaagtagaaagcactac 36
|||||||| ||||||||||||||| || ||||||
Sbjct: 86 acagtgcactcatccataaagtaggaaacactac 53
>34313_dre-mir-142b:mirbase
Length = 86
Score = 115 bits (58), Expect = 5e-27
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>34751_tni-mir-142b:mirbase
Length = 86
Score = 101 bits (51), Expect = 8e-23
Identities = 80/87 (91%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaac-tcttcgccacagtgtagtgt 61
||||||| |||| |||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaacgtctt-tacacagtgtagtgt 59
Query: 62 ttcctactttatggatgagtgtactgt 88
||||||||||||||||||||| |||||
Sbjct: 60 ttcctactttatggatgagtgcactgt 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 3 acagtgcagtcatccataaagtagaaagcactac 36
|||||||| ||||||||||||||| || ||||||
Sbjct: 86 acagtgcactcatccataaagtaggaaacactac 53
>25962_gga-mir-142:mirbase
Length = 88
Score = 99.6 bits (50), Expect = 3e-22
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| |||||||||||||||||||||||||| | || ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 62 tcctactttatggatgagtgtactgt 87
>25963_gga-mir-142:mirbase
Length = 88
Score = 99.6 bits (50), Expect = 3e-22
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| |||||||||||||||||||||||||| | || ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 62 tcctactttatggatgagtgtactgt 87
>31499_oan-mir-142:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 5e-18
Identities = 78/88 (88%), Gaps = 5/88 (5%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgc--cacagtgtagtg 60
||||||||||||||||||||||||||||||||||||| | ||| | ||||||||
Sbjct: 15 acagtgcagtcatccataaagtagaaagcactactaa---cagcgctgtagggtgtagtg 71
Query: 61 tttcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||||
Sbjct: 72 tttcctactttatggatgagtgtactgt 99
>27746_mml-mir-142:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| |||||||||||||||||||||||| | | | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>27747_mml-mir-142:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| |||||||||||||||||||||||| | | | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>28461_hsa-mir-142:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| |||||||||||||||||||||||| | | | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>28462_hsa-mir-142:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| |||||||||||||||||||||||| | | | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>30234_ptr-mir-142:mirbase
Length = 86
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| |||||||||||||||||||||||| | | | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>30845_ppy-mir-142:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| |||||||||||||||||||||||| | | | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>30846_ppy-mir-142:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| |||||||||||||||||||||||| | | | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>32747_rno-mir-142:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| |||||||||||||||||||||||| | | | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>32748_rno-mir-142:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| |||||||||||||||||||||||| | | | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>33228_bta-mir-142:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 5e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
|||||||||||| |||||||||||||||||||||||| | | | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg-agggtgtagtgtt 60
Query: 63 tcctactttatggatgagtgtactgt 88
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>25666_xla-mir-142:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 4 cagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgttt 63
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 64 cctactttatggatgagtgtactg 87
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25788_xtr-mir-142-1:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 4 cagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgttt 63
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 64 cctactttatggatgagtgtactg 87
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25789_xtr-mir-142-1:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 4 cagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgttt 63
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 64 cctactttatggatgagtgtactg 87
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25790_xtr-mir-142-2:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 4 cagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgttt 63
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 64 cctactttatggatgagtgtactg 87
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25791_xtr-mir-142-2:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 4 cagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgttt 63
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 64 cctactttatggatgagtgtactg 87
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>26473_tgu-mir-142:mirbase
Length = 71
Score = 69.9 bits (35), Expect = 3e-13
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 7 tgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtttcct 66
|||||||| |||||||||||||||||||||||||| | || ||||||||||||||
Sbjct: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
Query: 67 actttatggat 77
|||||||||||
Sbjct: 61 actttatggat 71
>33991_ssc-mir-142:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 53 gtgtagtgtttcctactttatggatgagtgtact 86
||||||||||||||||||||||||||||||||||
Sbjct: 47 gtgtagtgtttcctactttatggatgagtgtact 80
>33992_ssc-mir-142:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 53 gtgtagtgtttcctactttatggatgagtgtact 86
||||||||||||||||||||||||||||||||||
Sbjct: 47 gtgtagtgtttcctactttatggatgagtgtact 80
>27390_mdo-mir-142:mirbase
Length = 74
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 53 gtgtagtgtttcctactttatggatgagtg 82
||||||||||||||||||||||||||||||
Sbjct: 45 gtgtagtgtttcctactttatggatgagtg 74
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 gcagtcatccataaagtagaaagcactactaa 39
||||||| ||||||||||||||||||||||||
Sbjct: 1 gcagtcacccataaagtagaaagcactactaa 32
>26716_cfa-mir-142:mirbase
Length = 63
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 gtgtagtgtttcctactttatggatg 78
||||||||||||||||||||||||||
Sbjct: 38 gtgtagtgtttcctactttatggatg 63
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ccataaagtagaaagcactactaa 39
||||||||||||||||||||||||
Sbjct: 2 ccataaagtagaaagcactactaa 25
>27041_eca-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 gtgtagtgtttcctactttatggatg 78
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ccataaagtagaaagcactactaa 39
||||||||||||||||||||||||
Sbjct: 3 ccataaagtagaaagcactactaa 26
>27042_eca-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 gtgtagtgtttcctactttatggatg 78
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ccataaagtagaaagcactactaa 39
||||||||||||||||||||||||
Sbjct: 3 ccataaagtagaaagcactactaa 26
>31874_mmu-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 gtgtagtgtttcctactttatggatg 78
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ccataaagtagaaagcactactaa 39
||||||||||||||||||||||||
Sbjct: 3 ccataaagtagaaagcactactaa 26
>31875_mmu-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 gtgtagtgtttcctactttatggatg 78
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ccataaagtagaaagcactactaa 39
||||||||||||||||||||||||
Sbjct: 3 ccataaagtagaaagcactactaa 26
