miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34635_fru-mir-212:mirbase
Length = 95
Score = 161 bits (81), Expect = 1e-40
Identities = 90/93 (96%)
Strand = Plus / Plus
Query: 1 ggtcagcgcatcaacaccttggctctagactgcttactgctaacaccgctctgaagtaca 60
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 1 ggtcagcgcatcaacaccttggctctagactgcttactgctaaaaccgctcataagtaca 60
Query: 61 gtaacagtctacagtcatggctactgacgcctg 93
|||||||||||||||||||||||||||||||||
Sbjct: 61 gtaacagtctacagtcatggctactgacgcctg 93
>34367_dre-mir-212:mirbase
Length = 94
Score = 101 bits (51), Expect = 9e-23
Identities = 86/95 (90%), Gaps = 2/95 (2%)
Strand = Plus / Plus
Query: 2 gtcagcgcatcaacaccttggctctagactgcttactgctaacaccgctctgaa-gtaca 60
||||| ||||||| |||||||||||||||||||||||||||| | |||||| |||||
Sbjct: 1 gtcagtgcatcaataccttggctctagactgcttactgctaaatgtg-tctgaaagtaca 59
Query: 61 gtaacagtctacagtcatggctactgacgcctggc 95
||||||||||||||||||||||||||||| |||||
Sbjct: 60 gtaacagtctacagtcatggctactgacgtctggc 94
>25832_xtr-mir-212:mirbase
Length = 96
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 58 acagtaacagtctacagtcatggctactgacg 89
||||||||||||||||||||||||||||||||
Sbjct: 59 acagtaacagtctacagtcatggctactgacg 90
>27427_mdo-mir-212:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 caccttggctctagactgcttactgc 40
||||||||||||||||||||||||||
Sbjct: 15 caccttggctctagactgcttactgc 40
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 59 cagtaacagtctacagtcatggctactgacgcctggc 95
|||||||||||| |||||| ||| || ||||||||||
Sbjct: 53 cagtaacagtctccagtcacggccaccgacgcctggc 89
>27808_mml-mir-212:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 caccttggctctagactgcttactgc 40
||||||||||||||||||||||||||
Sbjct: 30 caccttggctctagactgcttactgc 55
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 59 cagtaacagtctacagtcatggctactgacgcctggc 95
|||||||||||| |||||| ||| || ||||||||||
Sbjct: 68 cagtaacagtctccagtcagggccaccgacgcctggc 104
>28530_hsa-mir-212:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 caccttggctctagactgcttactgc 40
||||||||||||||||||||||||||
Sbjct: 30 caccttggctctagactgcttactgc 55
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 59 cagtaacagtctacagtcatggctactgacgcctggc 95
|||||||||||| |||||| ||| || ||||||||||
Sbjct: 68 cagtaacagtctccagtcacggccaccgacgcctggc 104
>31939_mmu-mir-212:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 caccttggctctagactgcttactgc 40
||||||||||||||||||||||||||
Sbjct: 15 caccttggctctagactgcttactgc 40
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 59 cagtaacagtctacagtcatggctactgacgcctggc 95
|||||||||||| |||||| ||| || ||||||||||
Sbjct: 53 cagtaacagtctccagtcacggccaccgacgcctggc 89
>31940_mmu-mir-212:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 caccttggctctagactgcttactgc 40
||||||||||||||||||||||||||
Sbjct: 15 caccttggctctagactgcttactgc 40
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 59 cagtaacagtctacagtcatggctactgacgcctggc 95
|||||||||||| |||||| ||| || ||||||||||
Sbjct: 53 cagtaacagtctccagtcacggccaccgacgcctggc 89
>32803_rno-mir-212:mirbase
Length = 111
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 caccttggctctagactgcttactgc 40
||||||||||||||||||||||||||
Sbjct: 31 caccttggctctagactgcttactgc 56
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 59 cagtaacagtctacagtcatggctactgacgcctggc 95
|||||||||||| |||||| ||| || ||||||||||
Sbjct: 69 cagtaacagtctccagtcacggccaccgacgcctggc 105
>33289_bta-mir-212:mirbase
Length = 111
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 caccttggctctagactgcttactgc 40
||||||||||||||||||||||||||
Sbjct: 31 caccttggctctagactgcttactgc 56
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 59 cagtaacagtctacagtcatggctactgacgcctggc 95
|||||||||||| |||||| ||| || ||||||||||
Sbjct: 69 cagtaacagtctccagtcacggccaccgacgcctggc 105
>26772_cfa-mir-212:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 accttggctctagactgcttactgc 40
|||||||||||||||||||||||||
Sbjct: 1 accttggctctagactgcttactgc 25
>27096_eca-mir-212:mirbase
Length = 60
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 17 ccttggctctagactgcttactgc 40
||||||||||||||||||||||||
Sbjct: 1 ccttggctctagactgcttactgc 24
