miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus trichocarpa
Length = 88
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 142 tcctcggaccaggcttcattcccttcaat 170
||||||||||||||||||||||| |||||
Sbjct: 60 tcctcggaccaggcttcattcccctcaat 88
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 142 tcctcggaccaggcttcattcccttcaat 170
||||||||||||||||||||||| |||||
Sbjct: 66 tcctcggaccaggcttcattcccctcaat 94
>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
(castor bean)
Length = 151
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 140 tctcctcggaccaggcttcattccc 164
|||||||||||||||||||||||||
Sbjct: 121 tctcctcggaccaggcttcattccc 145
>RF00075;mir-166;BABK01008352.1/1692-1590 34305:Lotus japonicus
Length = 103
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 144 ctcggaccaggcttcattcccttca 168
|||||||||||||||||||||||||
Sbjct: 77 ctcggaccaggcttcattcccttca 101
>RF00075;mir-166;CAAP02000526.1/74430-74281 29760:Vitis vinifera
Length = 150
Score = 48.1 bits (24), Expect = 5e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 143 cctcggaccaggcttcattcccttcaat 170
|||||||||||||||||||||| |||||
Sbjct: 123 cctcggaccaggcttcattcccctcaat 150
>RF00075;mir-166;AAAA02025700.1/14722-14582 39946:Oryza sativa
Indica Group
Length = 141
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 143 cctcggaccaggcttcattccctt 166
||||||||||||||||||||||||
Sbjct: 114 cctcggaccaggcttcattccctt 137
>RF00075;mir-166;AACV01018689.1/7378-7519 39947:Oryza sativa
Japonica Group
Length = 142
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 143 cctcggaccaggcttcattccctt 166
||||||||||||||||||||||||
Sbjct: 115 cctcggaccaggcttcattccctt 138
>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 142 tcctcggaccaggcttcattccc 164
|||||||||||||||||||||||
Sbjct: 77 tcctcggaccaggcttcattccc 99
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 144 ctcggaccaggcttcattcccttcaa 169
||||||||||||||||||||| ||||
Sbjct: 99 ctcggaccaggcttcattcccctcaa 124
>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
(papaya)
Length = 138
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 144 ctcggaccaggcttcattcccttcaa 169
||||||||||||||||||||| ||||
Sbjct: 112 ctcggaccaggcttcattcccgtcaa 137
>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
pekinensis
Length = 122
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 tcggaccaggcttcattcccttcaat 170
|||||||||||||||||||| |||||
Sbjct: 97 tcggaccaggcttcattcccctcaat 122
>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
(thale cress)
Length = 145
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 tcggaccaggcttcattcccttcaat 170
|||||||||||||||||||| |||||
Sbjct: 120 tcggaccaggcttcattcccctcaat 145
>RF00075;mir-166;EU548914.1/298-397 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 144 ctcggaccaggcttcattcccttcaa 169
||||||||||||||||||||| ||||
Sbjct: 74 ctcggaccaggcttcattcccctcaa 99
>RF00075;mir-166;CU302248.6/62232-62044 3880:Medicago truncatula
(barrel medic)
Length = 189
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 145 tcggaccaggcttcattcccttcaat 170
|||||||||||||||||||| |||||
Sbjct: 164 tcggaccaggcttcattcccctcaat 189
>RF00075;mir-166;AM464541.1/10325-10481 29760:Vitis vinifera
Length = 157
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 144 ctcggaccaggcttcattcccttcaa 169
||||||||||||||||||||| ||||
Sbjct: 131 ctcggaccaggcttcattcccctcaa 156
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 144 ctcggaccaggcttcattcccttcaa 169
||||||||||||||||||||| ||||
Sbjct: 93 ctcggaccaggcttcattcccctcaa 118
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 144 ctcggaccaggcttcattcccttcaa 169
||||||||||||||||||||| ||||
Sbjct: 71 ctcggaccaggcttcattcccctcaa 96
>RF00075;mir-166;ABXC01000331.1/255164-255261 4558:Sorghum bicolor
(sorghum)
Length = 98
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 144 ctcggaccaggcttcattcccttcaa 169
||||||||||||||||||||| ||||
Sbjct: 72 ctcggaccaggcttcattcccctcaa 97
>RF00075;mir-166;ABXC01000758.1/126828-126715 4558:Sorghum bicolor
(sorghum)
Length = 114
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 143 cctcggaccaggcttcattccc 164
||||||||||||||||||||||
Sbjct: 87 cctcggaccaggcttcattccc 108
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 144 ctcggaccaggcttcattcccttcaa 169
||||||||||||||||||||| ||||
Sbjct: 71 ctcggaccaggcttcattcccctcaa 96
>RF00075;mir-166;AC027660.2/136704-136618 39947:Oryza sativa
Japonica Group
Length = 87
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 144 ctcggaccaggcttcattcccttcaa 169
||||||||||||||||||||| ||||
Sbjct: 61 ctcggaccaggcttcattcccctcaa 86
>RF00075;mir-166;AAAA02029560.1/62131-62045 39946:Oryza sativa
Indica Group
Length = 87
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 144 ctcggaccaggcttcattcccttcaa 169
||||||||||||||||||||| ||||
Sbjct: 61 ctcggaccaggcttcattcccctcaa 86
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 144 ctcggaccaggcttcattcccttcaa 169
||||||||||||||||||||| ||||
Sbjct: 77 ctcggaccaggcttcattcccctcaa 102
>RF00075;mir-166;ABEU01001509.1/37358-37431 145481:Physcomitrella
patens subsp. patens
Length = 74
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 143 cctcggaccaggcttcattccc 164
||||||||||||||||||||||
Sbjct: 47 cctcggaccaggcttcattccc 68
