miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>24644_bfl-mir-1:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 54 tgtatggaatgtaatgaagtatgtattgttag 85
|||||||||||||| ||||||||||| |||||
Sbjct: 52 tgtatggaatgtaaagaagtatgtatggttag 83
>34806_spu-mir-1:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtattg 81
|||||||||||| |||||||||||||
Sbjct: 58 tatggaatgtaaagaagtatgtattg 83
>38847_lgi-mir-1:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 54 tatggaatgtaaagaagtatgtatt 78
>25684_xtr-mir-1a-1:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgtatt 75
>25879_gga-mir-1a-1:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatgtatt 68
>25880_gga-mir-1a-2:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgtatt 75
>26388_tgu-mir-1-1:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 39 tatggaatgtaaagaagtatgtatt 63
>26389_tgu-mir-1-2:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 39 tatggaatgtaaagaagtatgtatt 63
>26936_eca-mir-1:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 48 tatggaatgtaaagaagtatgtatt 72
>26937_eca-mir-1-2:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgtatt 71
>27327_mdo-mir-1:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgtatt 75
>27641_mml-mir-1-2:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatgtatt 68
>28351_hsa-mir-1-2:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgtatt 75
>30036_ppa-mir-1:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgtatt 75
>30138_ptr-mir-1-2:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgtatt 75
>31416_oan-mir-1a:mirbase
Length = 102
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 60 tatggaatgtaaagaagtatgtatt 84
>31763_mmu-mir-1a-1:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgtatt 71
>31764_mmu-mir-1a-2:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgtatt 69
>31765_mmu-mir-1b:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgtatt 39
>31766_mmu-mir-1b:mirbase
Length = 122
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgtatt 39
>33119_bta-mir-1-1:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgtatt 71
>33120_bta-mir-1-2:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 51 tatggaatgtaaagaagtatgtatt 75
>33905_ssc-mir-1:mirbase
Length = 108
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 62 tatggaatgtaaagaagtatgtatt 86
>34185_dre-mir-1-2:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgtatt 76
>34535_fru-mir-1:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgtatt 71
>34683_tni-mir-1:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtatt 80
|||||||||||| ||||||||||||
Sbjct: 55 tatggaatgtaaagaagtatgtatt 79
>38719_cte-mir-1:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 gtatggaatgtaatgaagtatgta 78
||||||||||||| ||||||||||
Sbjct: 56 gtatggaatgtaaagaagtatgta 79
>25685_xtr-mir-1a-2:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtat 79
|||||||||||| |||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgtat 68
>27640_mml-mir-1-1:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtat 79
|||||||||||| |||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgtat 70
>28350_hsa-mir-1-1:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtat 79
|||||||||||| |||||||||||
Sbjct: 44 tatggaatgtaaagaagtatgtat 67
>30137_ptr-mir-1-1:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtat 79
|||||||||||| |||||||||||
Sbjct: 43 tatggaatgtaaagaagtatgtat 66
>30742_ppy-mir-1-1:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtat 79
|||||||||||| |||||||||||
Sbjct: 44 tatggaatgtaaagaagtatgtat 67
>34184_dre-mir-1-1:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 56 tatggaatgtaatgaagtatgtat 79
|||||||||||| |||||||||||
Sbjct: 60 tatggaatgtaaagaagtatgtat 83
