miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 69.9 bits (35), Expect = 2e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 23 gtgagcaaggtggagaagcagggcacgtgtattactaactcat 65
||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 1 gtgagcaagatggagaagcagggcacgtgcattactaactcat 43
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 69.9 bits (35), Expect = 2e-11
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 23 gtgagcaaggtggagaagcagggcacgtgtattactaactcat 65
||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 1 gtgagcaagatggagaagcagggcacgtgcattactaactcat 43
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 67.9 bits (34), Expect = 7e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 24 tgagcaaggtggagaagcagggcacgtgtattactaactcat 65
|||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactaactcat 43
Score = 48.1 bits (24), Expect = 6e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 195 aatgagttagtgttccatgtgcccatcttccccatcatga 234
||||||||||| | ||||||||| |||||||||||||||
Sbjct: 72 aatgagttagttcttcatgtgcccgtcttccccatcatga 111
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 65.9 bits (33), Expect = 3e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 25 gagcaaggtggagaagcagggcacgtgtattactaactcat 65
||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 3 gagcaagatggagaagcagggcacgtgcattactaactcat 43
Score = 63.9 bits (32), Expect = 1e-09
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 195 aatgagttagtgttccatgtgcccatcttccccatcatga 234
||||||||||| || |||||||||||||||||||||||||
Sbjct: 103 aatgagttagtttttcatgtgcccatcttccccatcatga 142
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 60.0 bits (30), Expect = 2e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 24 tgagcaaggtggagaagcagggcacgtgtattactaactcat 65
|||||||| ||||||||||||||||||| ||||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 196 atgagttagtgttccatgtgcccatcttccccatcatga 234
|||||||||| | ||||||||||||||| |||||||||
Sbjct: 129 atgagttagttcttcatgtgcccatcttcaccatcatga 167
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 60.0 bits (30), Expect = 2e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 24 tgagcaaggtggagaagcagggcacgtgtattactaactcat 65
|||||||| ||||||||||||||||||| ||||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 196 atgagttagtgttccatgtgcccatcttccccatcatga 234
|||||||||| | ||||||||||||||| |||||||||
Sbjct: 128 atgagttagttcttcatgtgcccatcttcaccatcatga 166
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 60.0 bits (30), Expect = 2e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 24 tgagcaaggtggagaagcagggcacgtgtattactaactcat 65
|||||||| ||||||||||||||||||| ||||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 196 atgagttagtgttccatgtgcccatcttccccatcatga 234
|||||||||| | ||||||||||||||| |||||||||
Sbjct: 127 atgagttagttcttcatgtgcccatcttcaccatcatga 165
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 60.0 bits (30), Expect = 2e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 24 tgagcaaggtggagaagcagggcacgtgtattactaactcat 65
|||||||| ||||||||||||||||||| ||||||| |||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcattactagctcat 43
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 52.0 bits (26), Expect = 4e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 28 caaggtggagaagcagggcacgtgtattactaactcat 65
|||| ||||||||||||||||||| | |||||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatactaactcat 43
Score = 44.1 bits (22), Expect = 0.001
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 197 tgagttagtgttccatgtgcccatcttccccatcatga 234
||||||||| | ||||||||| |||||||||||||||
Sbjct: 112 tgagttagttcttcatgtgcccctcttccccatcatga 149
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 52.0 bits (26), Expect = 4e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 197 tgagttagtgttccatgtgcccatcttccccatcatga 234
|||||||||| | ||||||||| |||||||||||||||
Sbjct: 254 tgagttagtgcttcatgtgcccctcttccccatcatga 291
Score = 44.1 bits (22), Expect = 0.001
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 28 caaggtggagaagcagggcacgtgtattactaactcat 65
|||| ||||||||||||||||||| | | |||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatgctaactcat 43
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 52.0 bits (26), Expect = 4e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 24 tgagcaaggtggagaagcagggcacgtgtattactaactcat 65
|||||||| ||||||||||||||||||| | ||||||||||
Sbjct: 2 tgagcaagatggagaagcagggcacgtgcaacactaactcat 43
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 33 tggagaagcagggcacgtgtattactaactcat 65
||||||||||||||||||| | |||||||||||
Sbjct: 3 tggagaagcagggcacgtgcactactaactcat 35
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 27 gcaaggtggagaagcagggcacgtgtattacta 59
||||| ||||||||||||||||||| |||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattacta 37
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 48.1 bits (24), Expect = 6e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 27 gcaaggtggagaagcagggcacgtgtattact 58
||||| ||||||||||||||||||| ||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattact 36
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 33 tggagaagcagggcacgtgtattactaactcatca 67
||||||||||||||||||| | | |||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaatgctaactcatca 45
>RF00647;MIR164;ABXC01006074.1/27552-27407 4558:Sorghum bicolor
(sorghum)
Length = 146
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 31 ggtggagaagcagggcacgtgtattac 57
||||||||||||||||||||| |||||
Sbjct: 9 ggtggagaagcagggcacgtgcattac 35
>RF00647;MIR164;AACV01011837.1/11132-11244 39947:Oryza sativa
Japonica Group
Length = 113
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 31 ggtggagaagcagggcacgtgtattac 57
||||||||||||||||||||| |||||
Sbjct: 9 ggtggagaagcagggcacgtgcattac 35
>RF00647;MIR164;ABXC01006220.1/150732-150882 4558:Sorghum bicolor
(sorghum)
Length = 151
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 aggtggagaagcagggcacgtg 51
||||||||||||||||||||||
Sbjct: 8 aggtggagaagcagggcacgtg 29
>RF00647;MIR164;AP008211.1/23198775-23198954 39947:Oryza sativa
Japonica Group
Length = 180
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 aggtggagaagcagggcacgtg 51
||||||||||||||||||||||
Sbjct: 8 aggtggagaagcagggcacgtg 29
