miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48574_gma-miR319c:pmrd
Length = 221
Score = 422 bits (213), Expect = e-119
Identities = 219/221 (99%)
Strand = Plus / Plus
Query: 11 ttgggagggaaagagagtgaaggagcttccctcagcccattcatggagataacgaaagat 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgggagggaaagagagtgaaggagcttccctcagcccattcatggagataacgaaagat 60
Query: 71 tgggttgctgaattaactgctagctcacacattcattcatacaatagtattcaattaggg 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgggttgctgaattaactgctagctcacacattcattcatacaatagtattcaattaggg 120
Query: 131 taatattgtgtgaatgaagcgggagtatatagtatctatattggaaccctctttctctgt 190
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 121 taatattgtgtgaatgaagcgggagtatatagtatctatattgcaaccctctttctctgt 180
Query: 191 gcttggactgaagggagctccttctttttctgctccctcca 231
|||||||||||| ||||||||||||||||||||||||||||
Sbjct: 181 gcttggactgaaaggagctccttctttttctgctccctcca 221
>54380_pvu-miR319c:pmrd
Length = 734
Score = 101 bits (51), Expect = 2e-22
Identities = 54/55 (98%)
Strand = Plus / Plus
Query: 3 tagtcacattgggagggaaagagagtgaaggagcttccctcagcccattcatgga 57
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tagtcacattgggaaggaaagagagtgaaggagcttccctcagcccattcatgga 271
Score = 79.8 bits (40), Expect = 9e-16
Identities = 58/63 (92%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 176 accctctttctctgtgcttggactgaagggagctccttctttttctgctccctccatttg 235
|||||||||||||| |||||||||||||||||||||||| |||||| | ||||||||||
Sbjct: 393 accctctttctctgagcttggactgaagggagctccttc--tttctgttgcctccatttg 450
Query: 236 tat 238
|||
Sbjct: 451 tat 453
>51712_ptc-miR319f:pmrd
Length = 202
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 177 ccctctttctctgtgcttggactgaagggagctccttc 214
|||||||| |||||||||||||||||||||||||||||
Sbjct: 158 ccctctttttctgtgcttggactgaagggagctccttc 195
>51351_ppl-miR319:pmrd
Length = 204
Score = 67.9 bits (34), Expect = 3e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 177 ccctctttctctgtgcttggactgaagggagctccttc 214
|||||||| |||||||||||||||||||||||||||||
Sbjct: 158 ccctctttttctgtgcttggactgaagggagctccttc 195
>46994_ath-miR319c:pmrd
Length = 199
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 180 tctttctctgtgcttggactgaagggagctccttctttttct 221
||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 157 tctttatctgtgtttggactgaagggagctccttctttttct 198
>51713_ptc-miR319g:pmrd
Length = 204
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 186 tctgtgcttggactgaagggagctccttc 214
|||||||||||||||||||||||||||||
Sbjct: 169 tctgtgcttggactgaagggagctccttc 197
>51710_ptc-miR319d:pmrd
Length = 193
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||||||||||||||||||||||||||
Sbjct: 155 ttctctgtgcttggactgaagggagctcc 183
>51709_ptc-miR319c:pmrd
Length = 196
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||||||||||||||||||||||||||
Sbjct: 158 ttctctgtgcttggactgaagggagctcc 186
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctc 210
||||||||||||||||||||||||||||
Sbjct: 143 ttctctgtgcttggactgaagggagctc 170
>54846_vvi-miR319f:pmrd
Length = 193
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 186 tctgtgcttggactgaagggagctcc 211
||||||||||||||||||||||||||
Sbjct: 155 tctgtgcttggactgaagggagctcc 180
>54844_vvi-miR319c:pmrd
Length = 182
Score = 50.1 bits (25), Expect = 8e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 187 ctgtgcttggactgaagggagctcc 211
|||||||||||||||||||||||||
Sbjct: 145 ctgtgcttggactgaagggagctcc 169
>46993_ath-miR319b:pmrd
Length = 172
Score = 50.1 bits (25), Expect = 8e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| ||||||||||||||||||||||
Sbjct: 142 ttctctatgcttggactgaagggagctcc 170
>48476_dso-miR159:pmrd
Length = 192
Score = 48.1 bits (24), Expect = 3e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctccttctttttctg 222
|||||| || ||||||||||||||||||| ||| ||||||
Sbjct: 151 ttctctttgattggactgaagggagctccctctctttctg 190
>54686_tae-miR319a:pmrd
Length = 196
Score = 44.1 bits (22), Expect = 5e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 190 tgcttggactgaagggagctcc 211
||||||||||||||||||||||
Sbjct: 174 tgcttggactgaagggagctcc 195
>54754_tar-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 151 ttctctatgattggactgaagggagctcc 179
>54670_svi-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 151 ttctctctgattggactgaagggagctcc 179
>54391_rin-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 151 ttctctctgattggactgaagggagctcc 179
>51707_ptc-miR319a:pmrd
Length = 188
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 187 ctgtgcttggactgaagggagctcc 211
|||| ||||||||||||||||||||
Sbjct: 154 ctgtacttggactgaagggagctcc 178
>51385_ppt-miR319b:pmrd
Length = 160
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 192 cttggactgaagggagctcct 212
|||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcct 160
>48788_nof-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 151 ttctctctgattggactgaagggagctcc 179
>48694_mma-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 151 ttctctttgattggactgaagggagctcc 179
>48573_gma-miR319b:pmrd
Length = 208
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 187 ctgtgcttggactgaagggagctcc 211
|||| ||||||||||||||||||||
Sbjct: 164 ctgtacttggactgaagggagctcc 188
>48572_gma-miR319a:pmrd
Length = 207
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 187 ctgtgcttggactgaagggagctcc 211
|||| ||||||||||||||||||||
Sbjct: 163 ctgtacttggactgaagggagctcc 187
>48479_fal-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 151 ttctctttgattggactgaagggagctcc 179
>48478_ech-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 151 ttctctttgattggactgaagggagctcc 179
>48429_crb-miR159:pmrd
Length = 194
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 153 ttctctttgattggactgaagggagctcc 181
>48422_cor-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 152 ttctctttgattggactgaagggagctcc 180
>48421_cmi-miR159:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 152 ttctctttgattggactgaagggagctcc 180
>48415_bvl-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 151 ttctctctgattggactgaagggagctcc 179
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 47 ttctctttgattggactgaagggagctcc 19
>46992_ath-miR319a:pmrd
Length = 176
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 144 ttctctttgattggactgaagggagctcc 172
>46860_ape-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 151 ttctctctgattggactgaagggagctcc 179
>46856_ahi-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 151 ttctctttgattggactgaagggagctcc 179
>46855_aha-miR159:pmrd
Length = 192
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 151 ttctctttgattggactgaagggagctcc 179
>46846_acb-miR159:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 2e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| || |||||||||||||||||||
Sbjct: 150 ttctctttgattggactgaagggagctcc 178
>55054_zma-miR319m:pmrd
Length = 178
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 gtgcttggactgaagggagctcct 212
||||||||| ||||||||||||||
Sbjct: 155 gtgcttggattgaagggagctcct 178
>54936_zma-miR159g:pmrd
Length = 180
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 gtgcttggactgaagggagctcct 212
||||||||| ||||||||||||||
Sbjct: 156 gtgcttggattgaagggagctcct 179
>54935_zma-miR159f:pmrd
Length = 181
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 gtgcttggactgaagggagctcct 212
||||||||| ||||||||||||||
Sbjct: 157 gtgcttggattgaagggagctcct 180
>54933_zma-miR159d:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 gtgcttggactgaagggagctcct 212
||||||||| ||||||||||||||
Sbjct: 175 gtgcttggattgaagggagctcct 198
>54932_zma-miR159c:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 gtgcttggactgaagggagctcct 212
||||||||| ||||||||||||||
Sbjct: 175 gtgcttggattgaagggagctcct 198
>54845_vvi-miR319e:pmrd
Length = 107
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 ttggactgaagggagctcct 212
||||||||||||||||||||
Sbjct: 77 ttggactgaagggagctcct 96
>54843_vvi-miR319b:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 cttggactgaagggagctcc 211
||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctcc 181
>54643_sof-miR319b:pmrd
Length = 176
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 gtgcttggactgaagggagctcct 212
||||||||| ||||||||||||||
Sbjct: 153 gtgcttggattgaagggagctcct 176
>54630_sof-miR159c:pmrd
Length = 238
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 gtgcttggactgaagggagctcct 212
||||||||| ||||||||||||||
Sbjct: 196 gtgcttggattgaagggagctcct 219
>54583_smo-miR319:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 cttggactgaagggagctcc 211
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
>54403_sbi-miR159b:pmrd
Length = 253
Score = 40.1 bits (20), Expect = 8e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 189 gtgcttggactgaagggagctcct 212
||||||||| ||||||||||||||
Sbjct: 211 gtgcttggattgaagggagctcct 234
>52398_ptc-miRf10576-akr:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 ttggactgaagggagctcct 212
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51714_ptc-miR319h:pmrd
Length = 195
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 ttggactgaagggagctcct 212
||||||||||||||||||||
Sbjct: 165 ttggactgaagggagctcct 184
>51711_ptc-miR319e:pmrd
Length = 192
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 193 ttggactgaagggagctcct 212
||||||||||||||||||||
Sbjct: 164 ttggactgaagggagctcct 183
>51390_ppt-miR319e:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 cttggactgaagggagctcc 211
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>51389_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 cttggactgaagggagctcc 211
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51388_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 cttggactgaagggagctcc 211
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51387_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 cttggactgaagggagctcc 211
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51386_ppt-miR319c:pmrd
Length = 189
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 cttggactgaagggagctcc 211
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
>51384_ppt-miR319a:pmrd
Length = 169
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 cttggactgaagggagctcc 211
||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167
>48687_ltu-miR319:pmrd
Length = 167
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 cttggactgaagggagctcc 211
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>46884_aqc-miR319:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 8e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 192 cttggactgaagggagctcc 211
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
