miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 75.8 bits (38), Expect = 3e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 180 tctttctctgtgcttggactgaagggagctccttcttt 217
||||||||||||||||||||||||||||||||||||||
Sbjct: 148 tctttctctgtgcttggactgaagggagctccttcttt 185
>RF00638;MIR159;EU549334.1/124-324 3702:Arabidopsis thaliana (thale
cress)
Length = 201
Score = 67.9 bits (34), Expect = 6e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 180 tctttctctgtgcttggactgaagggagctccttctttttct 221
||||| |||||| |||||||||||||||||||||||||||||
Sbjct: 157 tctttatctgtgtttggactgaagggagctccttctttttct 198
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 67.9 bits (34), Expect = 6e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 177 ccctctttctctgtgcttggactgaagggagctccttc 214
|||||||| |||||||||||||||||||||||||||||
Sbjct: 157 ccctctttttctgtgcttggactgaagggagctccttc 194
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 65.9 bits (33), Expect = 2e-10
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 177 ccctctttctctgtgcttggactgaagggagctccttcttt 217
|||||||| || |||||||||||||||||||||||||||||
Sbjct: 156 ccctctttttccgtgcttggactgaagggagctccttcttt 196
>RF00638;MIR159;EF203471.1/100-300 3712:Brassica oleracea
Length = 201
Score = 61.9 bits (31), Expect = 4e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 179 ctctttctctgtgcttggactgaagggagctccttcttt 217
|||||| |||||| |||||||||||||||||||||||||
Sbjct: 156 ctctttatctgtgtttggactgaagggagctccttcttt 194
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 58.0 bits (29), Expect = 6e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||||||||||||||||||||||||||
Sbjct: 143 ttctctgtgcttggactgaagggagctcc 171
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 58.0 bits (29), Expect = 6e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 186 tctgtgcttggactgaagggagctccttc 214
|||||||||||||||||||||||||||||
Sbjct: 168 tctgtgcttggactgaagggagctccttc 196
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 58.0 bits (29), Expect = 6e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||||||||||||||||||||||||||
Sbjct: 159 ttctctgtgcttggactgaagggagctcc 187
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 186 tctgtgcttggactgaagggagctcc 211
||||||||||||||||||||||||||
Sbjct: 160 tctgtgcttggactgaagggagctcc 185
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 52.0 bits (26), Expect = 4e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 186 tctgtgcttggactgaagggagctcc 211
||||||||||||||||||||||||||
Sbjct: 155 tctgtgcttggactgaagggagctcc 180
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 50.1 bits (25), Expect = 1e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 183 ttctctgtgcttggactgaagggagctcc 211
|||||| ||||||||||||||||||||||
Sbjct: 151 ttctctatgcttggactgaagggagctcc 179
>RF00638;MIR159;AASG02006722.1/5300-5498 3988:Ricinus communis
(castor bean)
Length = 199
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 193 ttggactgaagggagctccttcttt 217
|||||||||||||||||||||||||
Sbjct: 168 ttggactgaagggagctccttcttt 192
>RF00638;MIR159;AP006665.1/46415-46593 34305:Lotus japonicus
Length = 179
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 193 ttggactgaagggagctccttcttt 217
|||||||||||||||||||||||||
Sbjct: 148 ttggactgaagggagctccttcttt 172
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 187 ctgtgcttggactgaagggagctcc 211
|||||||||||||||||||||||||
Sbjct: 146 ctgtgcttggactgaagggagctcc 170
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 190 tgcttggactgaagggagctcc 211
||||||||||||||||||||||
Sbjct: 157 tgcttggactgaagggagctcc 178
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 190 tgcttggactgaagggagctcc 211
||||||||||||||||||||||
Sbjct: 164 tgcttggactgaagggagctcc 185
>RF00638;MIR159;ABEU01011353.1/55901-55718 145481:Physcomitrella
patens subsp. patens
Length = 184
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 192 cttggactgaagggagctccttcttt 217
||||||||||||||||||||| ||||
Sbjct: 152 cttggactgaagggagctcctccttt 177
