miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
(black-legged tick)
Length = 80
Score = 159 bits (80), Expect = 8e-39
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 5 ttcggatcaccgtgcttccttacttcccatatgtgtcccctcagagcggtatggaatgta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttcggatcaccgtgcttccttacttcccatatgtgtcccctcagagcggtatggaatgta 60
Query: 65 aagaagtatggagttccggt 84
||||||||||||||||||||
Sbjct: 61 aagaagtatggagttccggt 80
>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
(pea aphid)
Length = 95
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 gtatggaatgtaaagaagtatggag 77
|||||||||||||||||||||||||
Sbjct: 67 gtatggaatgtaaagaagtatggag 91
>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
(jewel wasp)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 gtatggaatgtaaagaagtatggag 77
|||||||||||||||||||||||||
Sbjct: 43 gtatggaatgtaaagaagtatggag 67
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ccgtgcttccttacttcccata 35
||||||||||||||||||||||
Sbjct: 10 ccgtgcttccttacttcccata 31
>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
bee)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 gtatggaatgtaaagaagtatggag 77
|||||||||||||||||||||||||
Sbjct: 43 gtatggaatgtaaagaagtatggag 67
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ccgtgcttccttacttcccata 35
||||||||||||||||||||||
Sbjct: 10 ccgtgcttccttacttcccata 31
>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
(red flour beetle)
Length = 74
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 gtatggaatgtaaagaagtatggag 77
|||||||||||||||||||||||||
Sbjct: 43 gtatggaatgtaaagaagtatggag 67
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ccgtgcttccttacttcccata 35
||||||||||||||||||||||
Sbjct: 10 ccgtgcttccttacttcccata 31
>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
corporis (human body louse)
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tatggaatgtaaagaagtatggag 77
||||||||||||||||||||||||
Sbjct: 44 tatggaatgtaaagaagtatggag 67
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 ccgtgcttccttacttcccatat 36
|||||||||||||||||||||||
Sbjct: 10 ccgtgcttccttacttcccatat 32
>RF00103;mir-1;BAAB01105211.1/2094-2168 7091:Bombyx mori (domestic
silkworm)
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tatggaatgtaaagaagtatggag 77
||||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatggag 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 ccgtgcttccttacttcccata 35
||||||||||||||||||||||
Sbjct: 10 ccgtgcttccttacttcccata 31
>RF00103;mir-1;AAGE02025061.1/66260-66336 7159:Aedes aegypti
(yellow fever mosquito)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tatggaatgtaaagaagtatggag 77
||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatggag 70
>RF00103;mir-1;ABKP02019312.1/70476-70554 377271:Anopheles gambiae
M
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tatggaatgtaaagaagtatggag 77
||||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatggag 72
>RF00103;mir-1;ABKQ02015823.1/27063-26985 377270:Anopheles gambiae
S
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tatggaatgtaaagaagtatggag 77
||||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatggag 72
>RF00103;mir-1;AAPT01020974.1/21428-21504 7222:Drosophila
grimshawi
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tatggaatgtaaagaagtatggag 77
||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatggag 70
>RF00103;mir-1;AAPU01010689.1/17805-17881 7230:Drosophila
mojavensis
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 tatggaatgtaaagaagtatggag 77
||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatggag 70
>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 tatggaatgtaaagaagtatggagtt 79
||||||||||||||||||||| ||||
Sbjct: 63 tatggaatgtaaagaagtatgtagtt 88
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 53 gtatggaatgtaaagaagtatg 74
||||||||||||||||||||||
Sbjct: 45 gtatggaatgtaaagaagtatg 66
