miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34999_dpu-mir-8:mirbase
Length = 98
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 51 tgatttctaatactgtcaggtaaagatgtcc 81
|||||||||||||||||||||||||||||||
Sbjct: 54 tgatttctaatactgtcaggtaaagatgtcc 84
>37561_lmi-mir-8:mirbase
Length = 61
Score = 60.0 bits (30), Expect = 3e-10
Identities = 54/61 (88%), Gaps = 2/61 (3%)
Strand = Plus / Plus
Query: 22 catcttaccagacagcattagattgagcctga--tttctaatactgtcaggtaaagatgt 79
||||||||| | ||||||||||||| | |||| |||||||||||||||||||| |||||
Sbjct: 1 catcttaccgggcagcattagattgcgactgagatttctaatactgtcaggtaacgatgt 60
Query: 80 c 80
|
Sbjct: 61 c 61
>35344_ame-mir-8:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 1e-09
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 21 acatcttaccagacagcattagattgagcctgat-ttctaatactgtcaggtaaagatgt 79
|||||||||| | |||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 14 acatcttaccgggcagcattagattgaagttgaccttctaatactgtcaggtaaagatgt 73
Query: 80 c 80
|
Sbjct: 74 c 74
>38851_lgi-mir-8:mirbase
Length = 98
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 54 tttctaatactgtcaggtaaagatgtcc 81
||||||||||||||||||||||||||||
Sbjct: 57 tttctaatactgtcaggtaaagatgtcc 84
>35274_aga-mir-8:mirbase
Length = 86
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 atttctaatactgtcaggtaaagatgtc 80
||||||||||||||||||||||||||||
Sbjct: 49 atttctaatactgtcaggtaaagatgtc 76
>35518_bmo-mir-8:mirbase
Length = 102
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 tttctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||||
Sbjct: 56 tttctaatactgtcaggtaaagatgtc 82
>37602_nlo-mir-8:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 tttctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||||
Sbjct: 49 tttctaatactgtcaggtaaagatgtc 75
>37635_nvi-mir-8:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 tttctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||||
Sbjct: 49 tttctaatactgtcaggtaaagatgtc 75
>37695_tca-mir-8:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 ttctaatactgtcaggtaaagatgtcc 81
|||||||||||||||||||||||||||
Sbjct: 44 ttctaatactgtcaggtaaagatgtcc 70
>37696_tca-mir-8:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 55 ttctaatactgtcaggtaaagatgtcc 81
|||||||||||||||||||||||||||
Sbjct: 44 ttctaatactgtcaggtaaagatgtcc 70
>38728_cte-mir-8:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 ttctaatactgtcaggtaaagatgtc 80
||||||||||||||||||||||||||
Sbjct: 57 ttctaatactgtcaggtaaagatgtc 82
>35171_aae-mir-8:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 ttctaatactgtcaggtaaagatgtc 80
||||||||||||||||||||||||||
Sbjct: 46 ttctaatactgtcaggtaaagatgtc 71
>36006_cqu-mir-8:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 ttctaatactgtcaggtaaagatgtc 80
||||||||||||||||||||||||||
Sbjct: 46 ttctaatactgtcaggtaaagatgtc 71
>36253_dgr-mir-8:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 ttctaatactgtcaggtaaagatgtc 80
||||||||||||||||||||||||||
Sbjct: 54 ttctaatactgtcaggtaaagatgtc 79
>37339_dvi-mir-8:mirbase
Length = 91
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 ttctaatactgtcaggtaaagatgtc 80
||||||||||||||||||||||||||
Sbjct: 54 ttctaatactgtcaggtaaagatgtc 79
>36087_dan-mir-8:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 52 tctaatactgtcaggtaaagatgtc 76
>36165_der-mir-8:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtc 75
>36345_dme-mir-8:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtc 75
>36346_dme-mir-8:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtc 75
>36763_dmo-mir-8:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 54 tctaatactgtcaggtaaagatgtc 78
>36836_dpe-mir-8:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtc 75
>36912_dps-mir-8:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtc 75
>37125_dse-mir-8:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtc 75
>37203_dsi-mir-8:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtc 75
>37414_dwi-mir-8:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 56 tctaatactgtcaggtaaagatgtc 80
>37493_dya-mir-8:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||||||||||
Sbjct: 51 tctaatactgtcaggtaaagatgtc 75
>38969_sja-mir-8:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tttctaatactgtcaggtaaagatg 78
||||||||||||| |||||||||||
Sbjct: 40 tttctaatactgttaggtaaagatg 64
>38968_sja-mir-8:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 tttctaatactgtcaggtaaagatg 78
||||||||||||| |||||||||||
Sbjct: 40 tttctaatactgttaggtaaagatg 64
>35047_api-mir-8:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 56 tctaatactgtcaggtaaagatgtc 80
|||||||||||||||||| ||||||
Sbjct: 39 tctaatactgtcaggtaatgatgtc 63
