miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
(black-legged tick)
Length = 71
Score = 127 bits (64), Expect = 2e-29
Identities = 71/72 (98%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 ctacatctaccctgtagatccgaatttgtctgcaacaagactacaaattcggttctagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ctacatctaccctgtagatccgaatttgtctgcaacaagactacaaattcggttctagag 60
Query: 61 aggctttgtgtg 72
||| ||||||||
Sbjct: 61 agg-tttgtgtg 71
>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
castaneum (red flour beetle)
Length = 71
Score = 79.8 bits (40), Expect = 4e-15
Identities = 65/72 (90%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 1 ctacatctaccctgtagatccgaatttgtctgcaacaagactacaaattcggttctagag 60
||||||||||||||||||||||||||||| || || || | ||||||||||||||||||
Sbjct: 1 ctacatctaccctgtagatccgaatttgtttgaaatcaggcgacaaattcggttctagag 60
Query: 61 aggctttgtgtg 72
||| ||||||||
Sbjct: 61 agg-tttgtgtg 71
>RF00104;mir-10;ABKQ02021837.1/5843-5769 377270:Anopheles gambiae
S
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ctacatctaccctgtagatccgaatttgt 29
||||||| |||||||||||||||||||||
Sbjct: 1 ctacatccaccctgtagatccgaatttgt 29
Score = 44.1 bits (22), Expect = 2e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 43 acaaattcggttctagagaggctttgtgtg 72
||||||||||||||||||||| ||||||||
Sbjct: 47 acaaattcggttctagagagg-tttgtgtg 75
>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
willistoni
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ctacatctaccctgtagatccgaatttgt 29
|||| ||||||||||||||||||||||||
Sbjct: 1 ctacgtctaccctgtagatccgaatttgt 29
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 acaaattcggttctagagagg 63
|||||||||||||||||||||
Sbjct: 49 acaaattcggttctagagagg 69
>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
purpuratus
Length = 84
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 2 tacatctaccctgtagatccgaatttgt 29
|||||| |||||||||||||||||||||
Sbjct: 2 tacatcaaccctgtagatccgaatttgt 29
>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
grimshawi
Length = 76
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tctaccctgtagatccgaatttgt 29
||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgt 29
Score = 44.1 bits (22), Expect = 2e-04
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 43 acaaattcggttctagagaggctttgtgtg 72
||||||||||||||||||||| ||||||||
Sbjct: 48 acaaattcggttctagagagg-tttgtgtg 76
>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
mojavensis
Length = 78
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 tctaccctgtagatccgaatttgt 29
||||||||||||||||||||||||
Sbjct: 6 tctaccctgtagatccgaatttgt 29
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 43 acaaattcggttctagagagg 63
|||||||||||||||||||||
Sbjct: 48 acaaattcggttctagagagg 68
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 8 taccctgtagatccgaatttgt 29
||||||||||||||||||||||
Sbjct: 8 taccctgtagatccgaatttgt 29
>RF00104;mir-10;CAAB01000183.1/83579-83654 31033:Takifugu rubripes
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgt 29
|||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgt 29
>RF00104;mir-10;AY303234.1/14458-14526 39110:Sphoeroides nephelus
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgt 29
|||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgt 29
>RF00104;mir-10;EF594314.1/41875-41950 8153:Haplochromis burtoni
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 accctgtagatccgaatttgt 29
|||||||||||||||||||||
Sbjct: 9 accctgtagatccgaatttgt 29
>RF00104;mir-10;AANH01009874.1/6075-5997 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 atctaccctgtagatccgaatttgt 29
|||||||||||||||||| ||||||
Sbjct: 5 atctaccctgtagatccggatttgt 29
>RF00104;mir-10;AB232920.1/58331-58253 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 5 atctaccctgtagatccgaatttgt 29
|||||||||||||||||| ||||||
Sbjct: 5 atctaccctgtagatccggatttgt 29
