miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00669;mir-96;ABJB010787234.1/6730-6807 6945:Ixodes scapularis
(black-legged tick)
Length = 78
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 12 cttccgttttttggcactagcacatttttgtgtttcgatgctacgacaaaaattgtggta 71
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cttccgttttttggcactagcacatttttgtgtttcgatgctacgacaaaaattgtggta 60
Query: 72 gtgtcaagcaataggaag 89
||||||||||||||||||
Sbjct: 61 gtgtcaagcaataggaag 78
>RF00669;mir-96;CAAE01014715.1/320294-320219 99883:Tetraodon
nigroviridis
Length = 76
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttttggcactagcacatttttgt 42
|||||||||||||||||||||||
Sbjct: 8 ttttggcactagcacatttttgt 30
>RF00669;mir-96;CAAB01003233.1/13798-13721 31033:Takifugu rubripes
Length = 78
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 ttttggcactagcacatttttgt 42
|||||||||||||||||||||||
Sbjct: 8 ttttggcactagcacatttttgt 30
>RF00669;mir-96;ABRQ01279950.1/675-752 9813:Procavia capensis
(cape rock hyrax)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ttttggcactagcacatttttg 41
||||||||||||||||||||||
Sbjct: 8 ttttggcactagcacatttttg 29
>RF00669;mir-96;AL590150.2/106766-106689 7955:Danio rerio
(zebrafish)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ttttggcactagcacatttttg 41
||||||||||||||||||||||
Sbjct: 8 ttttggcactagcacatttttg 29
>RF00669;mir-96;CAAB01000329.1/61906-61829 31033:Takifugu rubripes
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ttttggcactagcacatttttg 41
||||||||||||||||||||||
Sbjct: 8 ttttggcactagcacatttttg 29
>RF00669;mir-96;AANH01001637.1/239663-239741 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ttttggcactagcacatttttg 41
||||||||||||||||||||||
Sbjct: 8 ttttggcactagcacatttttg 29
>RF00669;mir-96;BAAF04047675.1/12047-12125 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ttttggcactagcacatttttg 41
||||||||||||||||||||||
Sbjct: 8 ttttggcactagcacatttttg 29
>RF00669;mir-96;AAVX01227232.1/474-397 7868:Callorhinchus milii
(ghost shark)
Length = 78
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 20 ttttggcactagcacatttttg 41
||||||||||||||||||||||
Sbjct: 8 ttttggcactagcacatttttg 29
