miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00237;mir-9;ABJB010367147.1/2213-2272 6945:Ixodes scapularis
          (black-legged tick)
          Length = 60

 Score = 73.8 bits (37), Expect = 4e-13
 Identities = 56/61 (91%), Gaps = 1/61 (1%)
 Strand = Plus / Plus

                                                                      
Query: 22 ttctttggttatctagctgtatgagtgttagaagacgtcataaagctaggttaccaaagt 81
          ||||||||||||||||||||||||||| ||  | || |||||||||||||||||||||||
Sbjct: 1  ttctttggttatctagctgtatgagtgatatta-acatcataaagctaggttaccaaagt 59

           
Query: 82 t 82
          |
Sbjct: 60 t 60




>RF00237;mir-9;AAPU01011594.1/225879-225819 7230:Drosophila
          mojavensis
          Length = 61

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 54/60 (90%)
 Strand = Plus / Plus

                                                                      
Query: 23 tctttggttatctagctgtatgagtgttagaagacgtcataaagctaggttaccaaagtt 82
          |||||||||||||||||||||||||| || |  ||||||||||||||| ||||| |||||
Sbjct: 2  tctttggttatctagctgtatgagtgataaataacgtcataaagctagcttaccgaagtt 61




>RF00237;mir-9;ABIR01000787.1/71736-71795 6334:Trichinella
          spiralis
          Length = 60

 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 54/59 (91%), Gaps = 1/59 (1%)
 Strand = Plus / Plus

                                                                     
Query: 22 ttctttggttatctagctgtatgagtgttagaagacgtcataaagctaggttaccaaag 80
          ||||||||||||||||||||||||||||    || ||||||||||||||||||||||||
Sbjct: 1  ttctttggttatctagctgtatgagtgtactgag-cgtcataaagctaggttaccaaag 58




>RF00237;mir-9;BAAE01106217.1/407-468 8090:Oryzias latipes
          (Japanese medaka)
          Length = 62

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 23 tctttggttatctagctgtatgagtgtta 51
          |||||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtgtta 30




>RF00237;mir-9;ABLF01047176.1/4611-4545 7029:Acyrthosiphon pisum
          (pea aphid)
          Length = 67

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 23 tctttggttatctagctgtatgagtgtta 51
          |||||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtgtta 30




>RF00237;mir-9;BAAF04020747.1/88-147 8090:Oryzias latipes
          (Japanese medaka)
          Length = 60

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 23 tctttggttatctagctgtatgagtgtt 50
          ||||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtgtt 29




>RF00237;mir-9;AAPN01432088.1/257-198 9258:Ornithorhynchus
          anatinus (platypus)
          Length = 60

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 23 tctttggttatctagctgtatgagtgt 49
          |||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtgt 28




>RF00237;mir-9;AAAB01008960.1/1144939-1144878 180454:Anopheles
          gambiae str. PEST
          Length = 62

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 23 tctttggttatctagctgtatgagtgt 49
          |||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtgt 28




>RF00237;mir-9;ABVD01485145.1/30-90 9358:Choloepus hoffmanni
          (Hoffmann's two-fingered sloth)
          Length = 61

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 23 tctttggttatctagctgtatgagtg 48
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;AAGV020387958.1/714-775 9361:Dasypus novemcinctus
          (nine-banded armadillo)
          Length = 62

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 23 tctttggttatctagctgtatgagtg 48
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;ABRQ01039829.1/2882-2943 9813:Procavia capensis
          (cape rock hyrax)
          Length = 62

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 23 tctttggttatctagctgtatgagtg 48
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;BAAF04134102.1/794-855 8090:Oryzias latipes
          (Japanese medaka)
          Length = 62

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 23 tctttggttatctagctgtatgagtg 48
          ||||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagtg 27




>RF00237;mir-9;AAST01027169.1/135-76 7240:Drosophila simulans
          Length = 60

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Plus

                                                        
Query: 25 tttggttatctagctgtatgagtgttagaagacgtcataaagctag 70
          |||||||||||||||||||||||| || |  |||||||||||||||
Sbjct: 4  tttggttatctagctgtatgagtgata-ataacgtcataaagctag 48




>RF00237;mir-9;AAJJ01000398.1/19121-19058 7070:Tribolium castaneum
          (red flour beetle)
          Length = 64

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 22 ttctttggttatctagctgtatgagt 47
          ||||||||||||||||||||||||||
Sbjct: 1  ttctttggttatctagctgtatgagt 26




>RF00237;mir-9;CAAK05014843.1/1888-1946 7955:Danio rerio
          (zebrafish)
          Length = 59

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 23 tctttggttatctagctgtatgagt 47
          |||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagt 26




>RF00237;mir-9;BAAF04047241.1/1745-1804 8090:Oryzias latipes
          (Japanese medaka)
          Length = 60

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 23 tctttggttatctagctgtatgagt 47
          |||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagt 26




>RF00237;mir-9;AAVX01065791.1/2124-2183 7868:Callorhinchus milii
          (ghost shark)
          Length = 60

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 23 tctttggttatctagctgtatgagt 47
          |||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgagt 26




>RF00237;mir-9;AAQA01000025.1/15457-15396 6279:Brugia malayi
          Length = 62

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 24 ctttggttatctagctgtatgagt 47
          ||||||||||||||||||||||||
Sbjct: 3  ctttggttatctagctgtatgagt 26




>RF00237;mir-9;ABEP02027847.1/93613-93673 7739:Branchiostoma
          floridae (Florida lancelet)
          Length = 61

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 23 tctttggttatctagctgtatgag 46
          ||||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatgag 25




>RF00237;mir-9;AAGD02008921.1/11473-11541 31234:Caenorhabditis
          remanei
          Length = 69

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 54 agacgtcataaagctaggttaccaaag 80
          |||| ||||||||||||||||||||||
Sbjct: 41 agacttcataaagctaggttaccaaag 67




>RF00237;mir-9;ABKE01012786.1/839-779 54126:Pristionchus pacificus
          Length = 61

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 23 tctttggttatctagctgtatga 45
          |||||||||||||||||||||||
Sbjct: 2  tctttggttatctagctgtatga 24




>RF00237;mir-9;AAVX01083387.1/420-360 7868:Callorhinchus milii
          (ghost shark)
          Length = 61

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 23 tctttggttatctagctgtatgagtgt 49
          ||||||||| |||||||||||||||||
Sbjct: 2  tctttggttttctagctgtatgagtgt 28




>RF00237;mir-9;AAZO01004437.1/24877-24818 121224:Pediculus humanus
          corporis (human body louse)
          Length = 60

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 22 ttctttggttatctagctgtatg 44
          |||||||||||||||||||||||
Sbjct: 1  ttctttggttatctagctgtatg 23




>RF00237;mir-9;Z81467.1/13319-13384 6239:Caenorhabditis elegans
          Length = 66

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 tcataaagctaggttaccaaag 80
          ||||||||||||||||||||||
Sbjct: 43 tcataaagctaggttaccaaag 64




>RF00237;mir-9;ABLE02000370.1/4844-4906 281687:Caenorhabditis
          japonica
          Length = 63

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 tcataaagctaggttaccaaag 80
          ||||||||||||||||||||||
Sbjct: 40 tcataaagctaggttaccaaag 61




>RF00237;mir-9;CAAC02000589.1/144634-144698 6238:Caenorhabditis
          briggsae
          Length = 65

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 tcataaagctaggttaccaaag 80
          ||||||||||||||||||||||
Sbjct: 42 tcataaagctaggttaccaaag 63




>RF00237;mir-9;ABEG01008189.1/7393-7325 135651:Caenorhabditis
          brenneri
          Length = 69

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 tcataaagctaggttaccaaag 80
          ||||||||||||||||||||||
Sbjct: 46 tcataaagctaggttaccaaag 67




>RF00237;mir-9;ABKE01001679.1/8647-8709 54126:Pristionchus
          pacificus
          Length = 63

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 59 tcataaagctaggttaccaaag 80
          ||||||||||||||||||||||
Sbjct: 40 tcataaagctaggttaccaaag 61




>RF00237;mir-9;AAGU02809341.1/1530-1589 9785:Loxodonta africana
          (African savanna elephant)
          Length = 60

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 28 ggttatctagctgtatgagtgt 49
          ||||||||||||||||||||||
Sbjct: 7  ggttatctagctgtatgagtgt 28