miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>35409_ame-mir-993:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 20 taccctgtagctccgggcttttgtttggtttctaataatcagaagctcgtttctacaggt 79
|||||||||| ||||||||||||| | || ||| ||||||||||||| |||||||||
Sbjct: 16 taccctgtagatccgggcttttgta-gaattgtaaatatcagaagctcgtctctacaggt 74
Query: 80 atcttacgg 88
|||||||||
Sbjct: 75 atcttacgg 83
>37597_ngi-mir-993:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 57 atcagaagctcgtttctacaggtatcttacgg 88
||||||||||||| ||||||||||||||||||
Sbjct: 48 atcagaagctcgtctctacaggtatcttacgg 79
>37675_nvi-mir-993:mirbase
Length = 119
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 57 atcagaagctcgtttctacaggtatcttacgg 88
||||||||||||| ||||||||||||||||||
Sbjct: 81 atcagaagctcgtctctacaggtatcttacgg 112
>37822_tca-mir-993:mirbase
Length = 88
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 57 atcagaagctcgtttctacaggtatcttacgg 88
||||||||||||| ||||||||||||||||||
Sbjct: 51 atcagaagctcgtctctacaggtatcttacgg 82
>37823_tca-mir-993:mirbase
Length = 88
Score = 56.0 bits (28), Expect = 5e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 57 atcagaagctcgtttctacaggtatcttacgg 88
||||||||||||| ||||||||||||||||||
Sbjct: 51 atcagaagctcgtctctacaggtatcttacgg 82
>34990_isc-mir-993:mirbase
Length = 92
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 58 tcagaagctcgtttctacaggtatctt 84
|||||||||||||||||||||||||||
Sbjct: 58 tcagaagctcgtttctacaggtatctt 84
>35094_api-mir-993:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 58 tcagaagctcgtttctacaggtatcttacgg 88
|||||||||||| ||||||||||||||||||
Sbjct: 52 tcagaagctcgtctctacaggtatcttacgg 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 taccctgtagctccgggcttttgt 43
|||||||||| |||||||||||||
Sbjct: 12 taccctgtagatccgggcttttgt 35
>35578_bmo-mir-993a:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 57 atcagaagctcgtttctacaggtatcttacgg 88
||||||||||||| ||||||||||||| ||||
Sbjct: 51 atcagaagctcgtctctacaggtatctcacgg 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 taccctgtagctccgggcttttgt 43
|||||||||| |||||||||||||
Sbjct: 16 taccctgtagatccgggcttttgt 39
>37627_nlo-mir-993:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 atcagaagctcgtttctacaggtatctt 84
||||||||||||| ||||||||||||||
Sbjct: 52 atcagaagctcgtctctacaggtatctt 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 taccctgtagctccgggcttttgt 43
|||||||||| |||||||||||||
Sbjct: 16 taccctgtagatccgggcttttgt 39
>36563_dme-mir-993:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 atcagaagctcgtttctacaggtatct 83
||||||||||||| |||||||||||||
Sbjct: 81 atcagaagctcgtctctacaggtatct 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 taccctgtagctccgggcttttgttt 45
|||||||||| |||||||||||||||
Sbjct: 16 taccctgtagttccgggcttttgttt 41
>36564_dme-mir-993:mirbase
Length = 119
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 atcagaagctcgtttctacaggtatct 83
||||||||||||| |||||||||||||
Sbjct: 81 atcagaagctcgtctctacaggtatct 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 taccctgtagctccgggcttttgttt 45
|||||||||| |||||||||||||||
Sbjct: 16 taccctgtagttccgggcttttgttt 41
>36997_dps-mir-993:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 atcagaagctcgtttctacaggtatct 83
||||||||||||| |||||||||||||
Sbjct: 77 atcagaagctcgtctctacaggtatct 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 taccctgtagctccgggcttttgttt 45
|||||||||| |||||||||||||||
Sbjct: 12 taccctgtagttccgggcttttgttt 37
>37298_dsi-mir-993:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 57 atcagaagctcgtttctacaggtatct 83
||||||||||||| |||||||||||||
Sbjct: 77 atcagaagctcgtctctacaggtatct 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 taccctgtagctccgggcttttgttt 45
|||||||||| |||||||||||||||
Sbjct: 12 taccctgtagttccgggcttttgttt 37
>35241_aae-mir-993:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 taccctgtagctccgggcttttgt 43
|||||||||| |||||||||||||
Sbjct: 18 taccctgtagttccgggcttttgt 41
>35327_aga-mir-993:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 taccctgtagctccgggcttttgt 43
|||||||||| |||||||||||||
Sbjct: 18 taccctgtagttccgggcttttgt 41
>36057_cqu-mir-993:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 20 taccctgtagctccgggcttttgt 43
|||||||||| |||||||||||||
Sbjct: 18 taccctgtagttccgggcttttgt 41
