miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48567_gma-miR171a:pmrd
Length = 102
Score = 192 bits (97), Expect = 3e-50
Identities = 97/97 (100%)
Strand = Plus / Plus
Query: 2 gttcaacgggatattggtccggttcaataagaaagcaatgctcaaaatgtttttgggtcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttcaacgggatattggtccggttcaataagaaagcaatgctcaaaatgtttttgggtcc 60
Query: 62 tgttttttcattgagccgtgccaatatcacgaaccac 98
|||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgttttttcattgagccgtgccaatatcacgaaccac 97
>48565_gma-miR170m:pmrd
Length = 80
Score = 159 bits (80), Expect = 5e-40
Identities = 80/80 (100%)
Strand = Plus / Plus
Query: 10 ggatattggtccggttcaataagaaagcaatgctcaaaatgtttttgggtcctgtttttt 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggatattggtccggttcaataagaaagcaatgctcaaaatgtttttgggtcctgtttttt 60
Query: 70 cattgagccgtgccaatatc 89
||||||||||||||||||||
Sbjct: 61 cattgagccgtgccaatatc 80
>54830_vvi-miR171c:pmrd
Length = 103
Score = 99.6 bits (50), Expect = 4e-22
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 7 acgggatattggtccggttcaataagaaagcaatgctcaaaatgtttttgggtcctgttt 66
||||||||||||| |||||||||||||||||| ||||| ||| |||||| || ||| ||
Sbjct: 8 acgggatattggtgcggttcaataagaaagcagtgctcgcaatctttttgagttctggtt 67
Query: 67 tttcattgagccgtgccaatatcacg 92
||| ||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatcacg 93
>51684_ptc-miR171a:pmrd
Length = 104
Score = 54.0 bits (27), Expect = 2e-08
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 6 aacgggatattggtccggttcaataagaaagcaatgctc 44
|||||||||||||| ||||||||| |||||| |||||||
Sbjct: 9 aacgggatattggtacggttcaatcagaaagtaatgctc 47
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 52.0 bits (26), Expect = 8e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 7 acgggatattggtccggttcaataagaaagcaatgctc 44
||||||||||||| ||||||||| |||||| |||||||
Sbjct: 1 acgggatattggtacggttcaatcagaaagtaatgctc 38
>54831_vvi-miR171d:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 61 ctgttttttcattgagccgtgccaatatcacg 92
||||| ||| ||||||||||||||||||||||
Sbjct: 59 ctgttgtttgattgagccgtgccaatatcacg 90
>48897_osa-miR171c:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 6 aacgggatattggtccggttcaataagaaagc 37
|||||||||||||| ||||||||| |||||||
Sbjct: 6 aacgggatattggtgcggttcaatcagaaagc 37
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 71 attgagccgtgccaatatcacg 92
>55030_zma-miR171c:pmrd
Length = 118
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 7 acgggatattggtccggttcaataagaaagc 37
||||||||||||| ||||||||| |||||||
Sbjct: 17 acgggatattggtgcggttcaatcagaaagc 47
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 73 tgagccgtgccaatatcacg 92
||||||||||||||||||||
Sbjct: 83 tgagccgtgccaatatcacg 102
>48896_osa-miR171b:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 66 ttttcattgagccgtgccaatatcacg 92
|||| ||||||||||||||||||||||
Sbjct: 67 ttttgattgagccgtgccaatatcacg 93
>48386_bol-miR171a:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacga 93
|||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacga 92
>48367_bna-miR171e:pmrd
Length = 92
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacga 93
|||||||||||||||||||||||
Sbjct: 69 attgagccgtgccaatatcacga 91
>48366_bna-miR171d:pmrd
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacga 93
|||||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatcacga 92
>46881_aqc-miR171f:pmrd
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 62 tgttttttcattgagccgtgccaatatcacg 92
|||| ||| ||||||||||||||||||||||
Sbjct: 55 tgttatttaattgagccgtgccaatatcacg 85
>55037_zma-miR171j:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 92 attgagccgtgccaatatcacg 113
>55029_zma-miR171b:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcacg 85
>54552_sly-miR171b:pmrd
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcacg 85
>54462_sbi-miR171k:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcacg 85
>54453_sbi-miR171b:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 95 attgagccgtgccaatatcacg 116
>51685_ptc-miR171b:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 73 attgagccgtgccaatatcacg 94
>48406_bra-miR171d:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 72 attgagccgtgccaatatcacg 93
>48405_bra-miR171c:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 66 attgagccgtgccaatatcacg 87
>48404_bra-miR171b:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 73 attgagccgtgccaatatcacg 94
>48403_bra-miR171a:pmrd
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 64 attgagccgtgccaatatcacg 85
>48365_bna-miR171c:pmrd
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 66 attgagccgtgccaatatcacg 87
>48364_bna-miR171b:pmrd
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 72 attgagccgtgccaatatcacg 93
>48363_bna-miR171a:pmrd
Length = 104
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 73 attgagccgtgccaatatcacg 94
>46979_ath-miR171c:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 89 attgagccgtgccaatatcacg 110
>46978_ath-miR171b:pmrd
Length = 117
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcacg 92
||||||||||||||||||||||
Sbjct: 77 attgagccgtgccaatatcacg 98
>55036_zma-miR171i:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcac 91
|||||||||||||||||||||
Sbjct: 67 attgagccgtgccaatatcac 87
>55033_zma-miR171f:pmrd
Length = 155
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcac 91
|||||||||||||||||||||
Sbjct: 117 attgagccgtgccaatatcac 137
>54579_smo-miR171a:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcac 91
|||||||||||||||||||||
Sbjct: 104 attgagccgtgccaatatcac 124
>54452_sbi-miR171a:pmrd
Length = 161
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcac 91
|||||||||||||||||||||
Sbjct: 124 attgagccgtgccaatatcac 144
>51691_ptc-miR171h:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcac 91
|||||||||||||||||||||
Sbjct: 73 attgagccgtgccaatatcac 93
>51690_ptc-miR171g:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcac 91
|||||||||||||||||||||
Sbjct: 73 attgagccgtgccaatatcac 93
>51346_ppe-miR171:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 54 ttgggtcctgttttttcattgagccgtgccaatatca 90
||||||||| | ||| ||||||||||||||||||||
Sbjct: 52 ttgggtcctttaatttgattgagccgtgccaatatca 88
>51345_ppe-miR170:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 54 ttgggtcctgttttttcattgagccgtgccaatatca 90
||||||||| | ||| ||||||||||||||||||||
Sbjct: 52 ttgggtcctttaatttgattgagccgtgccaatatca 88
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcac 91
|||||||||||||||||||||
Sbjct: 97 attgagccgtgccaatatcac 117
>48900_osa-miR171f:pmrd
Length = 127
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcac 91
|||||||||||||||||||||
Sbjct: 99 attgagccgtgccaatatcac 119
>48312_bdi-miR171c:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcac 91
|||||||||||||||||||||
Sbjct: 66 attgagccgtgccaatatcac 86
>46877_aqc-miR171b:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatcac 91
|||||||||||||||||||||
Sbjct: 57 attgagccgtgccaatatcac 77
>54836_vvi-miR171i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatca 90
||||||||||||||||||||
Sbjct: 71 attgagccgtgccaatatca 90
>54828_vvi-miR171a:pmrd
Length = 99
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 71 attgagccgtgccaatatca 90
||||||||||||||||||||
Sbjct: 70 attgagccgtgccaatatca 89
>54580_smo-miR171b:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 72 ttgagccgtgccaatatcac 91
||||||||||||||||||||
Sbjct: 71 ttgagccgtgccaatatcac 90
>54553_sly-miR171c:pmrd
Length = 121
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 65 tttttcattgagccgtgccaatatcacg 92
||||| ||||||||| ||||||||||||
Sbjct: 74 tttttgattgagccgcgccaatatcacg 101
>46879_aqc-miR171d:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 66 ttttcattgagccgtgccaatatc 89
|||| |||||||||||||||||||
Sbjct: 81 ttttgattgagccgtgccaatatc 104
>46878_aqc-miR171c:pmrd
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 62 tgttttttcattgagccgtgccaatatc 89
|||| ||| |||||||||||||||||||
Sbjct: 28 tgttatttaattgagccgtgccaatatc 1
